Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27550 276 / 8e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72250 107 / 1e-25 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G22610 82 / 4e-17 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G09170 46 / 3e-05 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 44 / 0.0002 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 43 / 0.0003 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27950 42 / 0.0005 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030271 [exp] 582 / 0 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 514 / 5e-179 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G030484 [exp] 366 / 2e-128 AT5G27550 127 / 8e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G140000 [exp] 102 / 9e-24 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G436200 [exp] 100 / 8e-23 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.002G110600 [exp] 83 / 3e-17 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G033900 [exp] 45 / 6e-05 AT5G27950 676 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G021100 [exp] 44 / 0.0001 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.003G223800 [exp] 44 / 0.0001 AT1G55550 647 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004487 [exp] 282 / 2e-88 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029914 [exp] 271 / 3e-84 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005582 [exp] 95 / 3e-21 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 95 / 4e-21 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 80 / 3e-16 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10035954 [exp] 80 / 4e-16 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10033849 [exp] 49 / 6e-06 AT5G27950 662 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018999 [exp] 44 / 0.0001 AT5G27950 617 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029865 [exp] 43 / 0.0004 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10020682 [exp] 42 / 0.0005 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G031801.1 pacid=42805173 polypeptide=Potri.005G031801.1.p locus=Potri.005G031801 ID=Potri.005G031801.1.v4.1 annot-version=v4.1 ATGTTTGTCCAAATAAGTCCAAGTGCTACTGACCTTGGAGAGACTCTTTGTTCACTAAATTTTGTGAGTCGAGTGCGAGGAATTGAAACCAGTCCTGCCT GCAAACAGGCTGATCTCTCTGAACTTTTCAAATACAAGCAAATGGTAGAAAAGTTAAAGCATGATGAGAAGGAAACAAAGAAGTTACAGGATAGCTTGCA ATCATTGCAGTTGAGGCTTGCTGCTAGAGAACATATGTGCAGAACTCTCCAAGAAAAGGTTCGAGAGCTTGAGAATCAATTAGGGGAGGAAAGAAAAACC AGACTAAAGCAGGAAACACGAGCTTTTGCAGCTGCTGCTTCTCAGTCTACGAAACAAGTAGTAGAGAAGAGAAAAGTAGATAAGAAGCCACCTCTGTGTC CTTCAAAGTTAAGGATGCCGTTGCGAAAAATCACCAATTTCATGCCTCCACCATCTCCTCTACAAAAACAGAAAACCGGTTCTGCTTCATCTTCAATGCA TGACAAAGAAAAAAATCCAAGAACCACAGCTGCAGGAACAAATACAAAAAGCCTTATGAAACCCAGACGTATGTCTGTTGCAGTCAGACCTCCTCCAATG TCAGCACAGGTTTTTCAGCCTAAGAGACGGGTATCCATTGCTACCTATCGTTCAGAGCCAACCTCAAACATGACTACACCACTTCAAACCTCGCGATATA AAAATGGGAATGTAGTTGGCAGGCAGTCATTTGTCAGGGACCCAAGAAAGCCAAGGAATTCAAAGCTGTTCTCTCCATTGCCAGAGTTCAGGACTGCATC GGAGACCACACCTACTGTTATGAGAACCAGTAGTAAATTCACGGGGAGTCCTCCAGCACAAGCAGTTTCTTGGAAGCCAAAGCACCCAACAGTTGTTGCA CTGCAACGAAAATCTCTGGTGTGGAGCCCGTTAAAGTTAAGGAGCTTTCAAAACAGGAGACCATCTTTGTTGCCCTATCGATCATCATCAACTAATGAGG TGCAATAA
AA sequence Show only first row Show all	>Potri.005G031801.1 pacid=42805173 polypeptide=Potri.005G031801.1.p locus=Potri.005G031801 ID=Potri.005G031801.1.v4.1 annot-version=v4.1 MFVQISPSATDLGETLCSLNFVSRVRGIETSPACKQADLSELFKYKQMVEKLKHDEKETKKLQDSLQSLQLRLAAREHMCRTLQEKVRELENQLGEERKT RLKQETRAFAAAASQSTKQVVEKRKVDKKPPLCPSKLRMPLRKITNFMPPPSPLQKQKTGSASSSMHDKEKNPRTTAAGTNTKSLMKPRRMSVAVRPPPM SAQVFQPKRRVSIATYRSEPTSNMTTPLQTSRYKNGNVVGRQSFVRDPRKPRNSKLFSPLPEFRTASETTPTVMRTSSKFTGSPPAQAVSWKPKHPTVVA LQRKSLVWSPLKLRSFQNRRPSLLPYRSSSTNEVQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27550			P-loop containing nucleoside t...		Potri.005G031801 [exp]	0	1
					Potri.017G021796 [exp]	3.31	0.8988
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.006G164000 [exp]	7.61	0.8325
AT5G27550			P-loop containing nucleoside t...		Potri.005G031850 [exp]	9.16	0.8685
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G120466 [exp]	10.81	0.8786
AT4G04940			transducin family protein / WD...		Potri.018G148132 [exp]	11.22	0.8751
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136601 [exp]	12.00	0.8395
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G017566 [exp]	14.00	0.9258
					Potri.003G013400 [exp]	15.71	0.8749
AT5G05800			unknown protein		Potri.005G153700 [exp]	19.59	0.8609
AT5G05800			unknown protein		Potri.001G299100 [exp]	25.29	0.8503

Compare expression of checked genes

Potri.005G031801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.