Plant FIBer expression Database

Potri.005G032200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14950 544 / 0 KMS1 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
AT1G05360 513 / 0 KMS2 Killing Me Slowly 2, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G021700
[exp]
731 / 0 AT4G14950 545 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Potri.008G151300
[exp]
552 / 0 AT4G14950 610 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Potri.010G089600
[exp]
550 / 0 AT4G14950 617 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004916
[exp]
535 / 0 AT4G14950 589 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Lus10010536
[exp]
527 / 0 AT4G14950 589 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.005G032200.1 pacid=42805587 polypeptide=Potri.005G032200.1.p locus=Potri.005G032200 ID=Potri.005G032200.1.v4.1 annot-version=v4.1
ATGGAGATCCCGAAAACACAAGAGCAGGACATCAACAATATGTCAATTTGTAGAATTAGAGAGAAGCAAAGAGAAGAATTAGAGAATCTAACGTTAGCAA
CACAGCCTATAAAGACCTTTGCATATTTTGTATTGGCTATAGCTCAATTTGTCCAGAGATTGTTTGCAAAAAAGGGCTGGCTTTTGCTTCTGACTAGTGT
CTTTATAGGAACTATTGGGATTCTAGTCATCACCATAGATGGCCCTTATCAGGAGTATGTCCTTGAACTTGTTAATTATCTTCGATTTGGACTCTGGTGG
TTGGCACTTGGTGTAGCATCGTCGATTGGTCTAGGATCAGGTCTGCATACATTTGTTCTGTATTTAGGTCCACATATTGCTCTATTCACAATCAAAGCTG
TAAAGTGTGGCCGCGTTGATATAAAAAGCTCTGTATATGATACGATTCAACTGCATAGTGGTCCTTCATGGCTGGACAGAAACTGCACTTCTTTTGGGCC
TCCAATGTATTCATCACTGCAAGGCTCCCGAATTCCACTGACCAGCATTTTGGCTCAGATTCAACTTGAGGCTGTTTTGTGGGGCATTGGAACTGCACTA
GGGGAGCTTCCTCCATATTTCATATCTAGAGCTGCTAGCATGTCAGGTAGCAAGCTGGAAGTCATGAAAGAATTTGAATCTTCTTCAGAACAAGATAACA
CAATCATGGCCACTCAAATGAAACAGATTAAGAACTGGCTCCTTTCACATTTGCAGTATATGAACTTCTTCACTATTCTAGTTCTTGCTTCGGTGCCAAA
TCCTCTTTTTGACCTTGCAGGTATCTTGTGTGGGCAATTTGGAATTCCATTTTGGAAGTTCTTCCTCGCAACATTGACTGGAAAGGCAATCATCAAAACC
CACATTCAGACAGCTTTTATCATCTCAGTATGCAACCATCAACTCCTTGACTTAATAGAAAATGAGATGATTCGATTGCTCAGCTTTGTCCCTGGACTCG
CTACAGTTCTGCCAAAACTCGTTGCAAAACTACAAATTATTAGAAACAAGTATATGGCACCCACACCTACAGTTTCAAATGTTGCGGTGGGAAAATGGGA
CTTCTCATTTGCTTCAATATGGAACACGGTCATATTGCTCATGCTCACGACCTTCTTCTTTAAAATTGTGACAGCAACTGCACAGAGCTTTCTCAAGGAA
CAGCAGGAGAAAGAGCTAGCATTGTTCAACTCCTCTTCTGCATCAAGCCCTTCCTCATCCAAAACCATTTAA
AA sequence
>Potri.005G032200.1 pacid=42805587 polypeptide=Potri.005G032200.1.p locus=Potri.005G032200 ID=Potri.005G032200.1.v4.1 annot-version=v4.1
MEIPKTQEQDINNMSICRIREKQREELENLTLATQPIKTFAYFVLAIAQFVQRLFAKKGWLLLLTSVFIGTIGILVITIDGPYQEYVLELVNYLRFGLWW
LALGVASSIGLGSGLHTFVLYLGPHIALFTIKAVKCGRVDIKSSVYDTIQLHSGPSWLDRNCTSFGPPMYSSLQGSRIPLTSILAQIQLEAVLWGIGTAL
GELPPYFISRAASMSGSKLEVMKEFESSSEQDNTIMATQMKQIKNWLLSHLQYMNFFTILVLASVPNPLFDLAGILCGQFGIPFWKFFLATLTGKAIIKT
HIQTAFIISVCNHQLLDLIENEMIRLLSFVPGLATVLPKLVAKLQIIRNKYMAPTPTVSNVAVGKWDFSFASIWNTVILLMLTTFFFKIVTATAQSFLKE
QQEKELALFNSSSASSPSSSKTI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14950 KMS1 Killing Me Slowly 1, SNARE ass... Potri.005G032200
[exp]
0 1
AT5G62520 SRO5 similar to RCD one 5 (.1.2) Potri.015G076500
[exp]
19.33 0.7245
AT2G36950 Heavy metal transport/detoxifi... Potri.006G124800
[exp]
21.63 0.7109
AT5G62620 Galactosyltransferase family p... Potri.015G067600
[exp]
40.18 0.6638
AT2G33710 AP2_ERF Integrase-type DNA-binding sup... Potri.005G087200
[exp]
52.24 0.6713
AT1G67580 CDKG;2 Protein kinase superfamily pro... Potri.012G094600
[exp]
53.27 0.6275
AT4G28880 CKL3 casein kinase I-like 3 (.1) Potri.018G084500
[exp]
64.12 0.6695
Potri.018G013850
[exp]
64.61 0.6518
AT5G62960 unknown protein Potri.015G078200
[exp]
70.64 0.6545
AT4G36990 HSF AT-HSFB1, ATHSF... ARABIDOPSIS THALIANA HEAT SHOC... Potri.007G043800
[exp]
90.82 0.6478
AT2G24640 UBP19 ubiquitin-specific protease 19... Potri.006G270600
[exp]
100.43 0.6184

Potri.005G032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.