Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55020 1284 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 1186 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G72520 721 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 716 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT3G45140 671 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 633 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G032400 [exp] 1707 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032700 [exp] 1686 / 0 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022000 [exp] 1571 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032800 [exp] 1503 / 0 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022100 [exp] 1433 / 0 AT1G55020 1241 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.008G151500 [exp] 1291 / 0 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G089500 [exp] 1266 / 0 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G177200 [exp] 804 / 0 AT3G22400 786 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G018200 [exp] 794 / 0 AT3G22400 791 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015184 [exp] 1253 / 0 AT1G55020 1245 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10004915 [exp] 1248 / 0 AT3G22400 1289 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031505 [exp] 1242 / 0 AT1G55020 1237 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10001465 [exp] 1170 / 0 AT1G55020 1162 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10008202 [exp] 1104 / 0 AT1G55020 1100 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10025857 [exp] 801 / 0 AT3G22400 809 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10013151 [exp] 743 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 739 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10015666 [exp] 738 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10002547 [exp] 677 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [poplar] [flax] Lipoxygenase Lipoxygenase
Representative CDS sequence Show only first row Show all	>Potri.005G032600.2 pacid=42804960 polypeptide=Potri.005G032600.2.p locus=Potri.005G032600 ID=Potri.005G032600.2.v4.1 annot-version=v4.1 ATGTTTCAGAACATCGTTAATGCTATCGCATCATGCTGTGCAGGGGACAGTAAGATGAAGATCAAAGGCACTGTTGTGTTGATGAAGAAGAATGTCTTAG AATTCAATGACTTTCATGCTTCGGTTCTTGATCGTGGCCATGAGTTGTTTGGCCAAGGAGTCTCTCTGCAAGTCATTAGCGCTGCCAAAAGTGACCCTCC AGAGAATGATTTGAAAGGGAAGCTAGGAGAGCCTGCATATTTGGAAGAATGGATTACTACCATCACTTCCTTAACCGCCGGCGAGTCGGCTTTCAAGGTC ACCTTTGACTGGGATGAGGAGATTGGAGTTCCAGGGGCATTTCTGATAAGAAACAAACATCACAGTGAATTCTACCTCAAGACTGTCACACTTGAAGATG TTCCTGGCCAAGGCCGAGTCCACTTTGTTTGCAACTCGTGGATTTATCCTACGAAATGTTACAATTATGATCGTGTTTTCTTCACTAACCAGAATTATCT GCCGCACGAGACACCTGCACCGCTACGTAAATACAGGGAAGAAGAACTGGTTAAATTGAGAGGAGATGGAAAAGGAGAGCTTAAGGAATGGGACCGCGTT TACGACTATGCTTACTACAATGATTTGGGAGATCCTGACAAGGGTGCAAAGTATGTCCGCCCTGTTCTTGGTGGATCTTCTGAGTACCCTTATCCTCGTA GGGGCAGAACTGGCCGAGCACCAGCAAAATCAGATCCCAACACTGAGAGCAGGCTGCCACTTCTCATGAGCTTAAACATATATGTTCCAAGAGATGAACG ATTCGGTCACCTGAAGTTGGCTGACTTCCTTGCTTATGCACTGAAATCCGTCGCTCAATTTATTAAGCCTGAACTGGAAGCTTTACGTGACAGCACCCCT AATGAGTTTGACTCCTTTGCTGCTGTACTGGATCTCTATGAGGGAGGGTTTAAGCTGCCTGATGGTCCCCTACTAGAAAATCTTAAGAAAAACATTCCCG TGGAGATGCTCAAGGAAATTATTCGAACTGATGGAGAAGGCCTTTTCAGATTTCCAAAGCCTCAAGTGATTCAAGAGAGCAATTCTGCTTGGAGGACGGA TGAAGAATTCGGTAGAGAAATGCTGTCTGGAGTAAACCCTGTTATCATCCGTCGTCTTGAGGAATTCCCTCCCAAAAGCAAGCTAGACAGCAAACTTTAT GGTGATCAAAACAGCACCATAACTGAGGAGCACATCAAGGATAGTCTGGATGGACTGTCCATAGATGAGGCGATCGAGAAGAACAGGATGTTCATATTAG ATCACCATGACGCATTGATGCCATACCTGAGGAGGATAAACACTACTACCACGAAGACTTATGCATCAAGGACTCTGCTTTTCTTGAAAGATGACGGGAC TTTGAAGCCTCTTGTAATTGAGTTAAGCTTGCCCCATGAAGAAGGAGATGAATTTGGAGCCATTAGCAAAGTCTACACCCCAGCTGAACATGGCGTTGAA GGCTCCATTTGGGATCTGGCTAAAGCTTATGTGGCTGTTAACGACTCCGGTTACCATCAGCTTATTAGCCATTTCTTGAACACTCATGCTGTGAGTGAGC CATTTGTGATTGCAACAAATAGACAACTCAGCGTGCTTCACCCAATCTATAAACTTTTGGAACCTCACTTCCGTGACACAATGAACATCAATGCGCTCGC TAGGCAGACGCTCATCAATGCTGGTGGAATCCTGGAATCAACGGTTTATCCTGCAAAGTATGCCATGGAAATGTCATCAGTAATTTACAAAAACTGGAAT TTCACAGAGCAAGCACTTCCTGAAGACCTGAAGAAGAGAGGAGTGGCAGTGGAGGATCCAAAGTCTCCACATGGTGTTCGCCTGCTGATAGAAGACTATC CATACGCTGTTGATGGGCTAGAGATATGGTCAGCAATCAAAGAATGGGTCAGAGACTATTGCTCTTTCTACTACAAGAATGATGAGATGATTCGAAAGGA TTCTGAACTACAATCATGGTGGAAGGAAGTGAGAGAGGAAGGGCATGGTGACCTGAAAGATGCACCCTGGTGGCCTAAGATGCTGACTCGTGAAGAGCTA ATAGACTCATGCACCATAATCATATGGGTGGCGTCAGCCCTCCATGCAGCTGTCAATTTTGGTCAGTACCCTTATGCAGGCTACCTTCCCAATCGTCCAA CCGTAAGCCGAAGGTTCATGCCCGAGGAAGGTTCTCCTGACTATAAGGAGCTCAAGTCGAACCCTGATAAGGCTTTCTTGAAAACAATCACTGCACAGTT GCAAACACTTCTTGGAATTTCCCTCATAGAAATTCTGTCAAGGCATTCCTCAGATGAGGTGTATCTTGGACAGAGAGACACTCATGAATGGACAGCAGAC AAGAAACCATTAGAGGCGTTTGAGAAATTTGGAAAGAAACTGGCAGAAATTGAGGACAAAATGTTATACATGAACAAAGCTGGGAAATGGAAGAATCGGG TCGGTCCAGTCGAGGTGCCATACACTTTGTTGGTTCCTACCAGTGAAGGTGGACTCACTGGAAGGGGAATTCCTAACAGCGTCTCAATCTAA
AA sequence Show only first row Show all	>Potri.005G032600.2 pacid=42804960 polypeptide=Potri.005G032600.2.p locus=Potri.005G032600 ID=Potri.005G032600.2.v4.1 annot-version=v4.1 MFQNIVNAIASCCAGDSKMKIKGTVVLMKKNVLEFNDFHASVLDRGHELFGQGVSLQVISAAKSDPPENDLKGKLGEPAYLEEWITTITSLTAGESAFKV TFDWDEEIGVPGAFLIRNKHHSEFYLKTVTLEDVPGQGRVHFVCNSWIYPTKCYNYDRVFFTNQNYLPHETPAPLRKYREEELVKLRGDGKGELKEWDRV YDYAYYNDLGDPDKGAKYVRPVLGGSSEYPYPRRGRTGRAPAKSDPNTESRLPLLMSLNIYVPRDERFGHLKLADFLAYALKSVAQFIKPELEALRDSTP NEFDSFAAVLDLYEGGFKLPDGPLLENLKKNIPVEMLKEIIRTDGEGLFRFPKPQVIQESNSAWRTDEEFGREMLSGVNPVIIRRLEEFPPKSKLDSKLY GDQNSTITEEHIKDSLDGLSIDEAIEKNRMFILDHHDALMPYLRRINTTTTKTYASRTLLFLKDDGTLKPLVIELSLPHEEGDEFGAISKVYTPAEHGVE GSIWDLAKAYVAVNDSGYHQLISHFLNTHAVSEPFVIATNRQLSVLHPIYKLLEPHFRDTMNINALARQTLINAGGILESTVYPAKYAMEMSSVIYKNWN FTEQALPEDLKKRGVAVEDPKSPHGVRLLIEDYPYAVDGLEIWSAIKEWVRDYCSFYYKNDEMIRKDSELQSWWKEVREEGHGDLKDAPWWPKMLTREEL IDSCTIIIWVASALHAAVNFGQYPYAGYLPNRPTVSRRFMPEEGSPDYKELKSNPDKAFLKTITAQLQTLLGISLIEILSRHSSDEVYLGQRDTHEWTAD KKPLEAFEKFGKKLAEIEDKMLYMNKAGKWKNRVGPVEVPYTLLVPTSEGGLTGRGIPNSVSI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032600 [exp]	0	1
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032700 [exp]	1.41	0.9587
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032400 [exp]	3.46	0.9229
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143433 [exp]	4.24	0.9324
AT1G21326			VQ motif-containing protein (....		Potri.005G189300 [exp]	4.47	0.9291
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.009G064700 [exp]	4.47	0.8889
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145530 [exp]	6.92	0.9099
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.005G057800 [exp]	8.36	0.9112
AT3G23440		EDA6, MEE37	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G068800 [exp]	8.77	0.9177
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Potri.005G160800 [exp]	10.09	0.8934
AT1G47670			Transmembrane amino acid trans...		Potri.004G181200 [exp]	10.39	0.8765	PtrLHT8

Compare expression of checked genes

Potri.005G032600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.