Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55020 1307 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 1198 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G72520 723 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 716 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT3G45140 667 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 636 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G032400 [exp] 1754 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 1686 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022000 [exp] 1601 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032800 [exp] 1453 / 0 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022100 [exp] 1439 / 0 AT1G55020 1241 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.008G151500 [exp] 1310 / 0 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G089500 [exp] 1286 / 0 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G177200 [exp] 806 / 0 AT3G22400 786 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G018200 [exp] 797 / 0 AT3G22400 791 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015184 [exp] 1285 / 0 AT1G55020 1245 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10031505 [exp] 1278 / 0 AT1G55020 1237 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10004915 [exp] 1253 / 0 AT3G22400 1289 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10001465 [exp] 1185 / 0 AT1G55020 1162 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10008202 [exp] 1118 / 0 AT1G55020 1100 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10025857 [exp] 804 / 0 AT3G22400 809 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10013151 [exp] 751 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 744 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10015666 [exp] 743 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10002547 [exp] 676 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [poplar] [flax] Lipoxygenase Lipoxygenase
Representative CDS sequence Show only first row Show all	>Potri.005G032700.1 pacid=42805334 polypeptide=Potri.005G032700.1.p locus=Potri.005G032700 ID=Potri.005G032700.1.v4.1 annot-version=v4.1 ATGTTGCATAGCATTATTGATGCCATTACAGGTGATCATAGTAATGGTACTAAAAAGATGGTGAAGAAAATCAAAGGGACTGTTGTGCTGATGAAGAAAA ATGTTCTGGACTTCAATGATTTCAATGCATCAGTTCTTGATCGTGTTCATGAGTTCTTAGGCCAAAGAGTCTCTCTGCAACTCGTTAGCGCTGTTAACAG TGATCCCTCTGAGAATGATTTGAAAGGGAAGCTAGGAGAGCCTGCATATTTGGAAGAATGGATTACCACCATCACTTCCTTAACCGCCGGCGAGTCGGCT TTCAAGGTCACCTTTGACTGGGATGAGGAGATTGGAGTTCCAGGGGCATTTCTGATAAGAAACAATCATCACAGTGAATTCTACCTCAAGACTGTCACAC TTGAAGATGTTCCTGGCCAAGGCCGAGTCCACTTTGTTTGCAACTCGTGGATTTATCCTACGACGCGTTACAATTATGATCGCGTTTTCTTCACTAACCA GAATTATCTGCCGCACGAGACACCTGCACCGCTACGTAAATACAGGGAAGAAGAACTGGTTAAATTGAGAGGAGATGGAAAAGGAGAGCTTAAGGAATGG GACCGCGTTTACGACTATGCTTACTACAATGATTTGGGAGATCCTGACAAGGGTGCAAAGTATGCCCGCCCTGTTCTTGGTGGATCTTCTGAGTACCCTT ATCCTCGTAGGGGCAGAACTGGCCGAGCACCAGCAAAATCAGATCCCAACACTGAGAGTAGGCAGCCGCTTCTCATGAGCTTAAACATATATGTTCCAAG AGATGAACGATTCGGTCACCTGAAGATGTCTGACTTCCTTGCTTATGCACTGAAATCCGTCGCTCAATTTATTAGGCCTGAACTGGAAGCTTTATGTGAC AGCACCCCTAATGAGTTTGACTCCTTTGATGATGTACTGGATCTCTATGAGGGAGGGTTTAAGCTGCCTGATGGTCCCCTACTAGAAAATCTTACGAAAA ACATTCCCGTGGAGATGCTCAAGGAAATTATTCCGACTGATGGAGAAGGCCTTTTCAGATTTCCAAAGCCTCAAGTGATTCAAGAGAGCAATTCTGCTTG GAGGACGGATGAAGAATTCGGTAGAGAAATGCTGTCAGGAGTAAACCCTGTTATCATCCGTCGTCTCGAGGAATTCCCTCCCAAAAGCAAGCTAGACAGC AAACTTTATGGTGATCAAAACAGCACCATAACTGAGGAGCACATCAAGGATAGTCTGGATGGACTGTCCATAGATGAGGCGATCGAGAAGAACAGGATGT TCATATTAGATCACCATGATGCATTGATGCCATACCTGAGGAGGATAAACACTACTACCACGAAGACTTATGCATCAAGGACTCTGCTTTTCTTGAAAGA TGACGGGACTTTGAAGCCTCTTGTAATTGAGTTAAGCTTGCCCCATGAAGAAGGAGATGAATTTGGAGCCATTAGCAAAGTCTACACCCCAGCTGAACAT GGTGTTGAAGGCTCCATTTGGGATCTGGCTAAAGCTTATGTGGCTGTTAACGACTCCGGTTACCATCAGCTTATTAGCCATTTCTTGAACACTCATGCTG TGAGTGAGCCATTTGTGATTGCAACAAATAGACAACTCAGCGTGCTTCACCCAATCTATAAACTTTTGGAACCTCACTTCCGTGACACAATGAACATCAA TGCGCTCGCTAGGCAGACGCTCATCAATGCTGGTGGAATCCTGGAATCAACAGTTTATCCTGCAAAGTATGCCATGGAAATGTCATCAGTAATTTACAGA AACTGGAATTTCACAGAGCAAGCACTTCCTGAAGACCTGAAGAAGAGAGGAGTGGCAGTTGAGGATCCAAAGTCTCCACATGGTGTTCGCCTACTGATAG AAGACTATCCATACGCTGTTGATGGGCTAGAGATATGGTCAGCAATCAAAGAATGGGTCAGAGACTATTGCTCTTTCTACTACAAGAATGATGAGATGAT TCAAAAGGATTCTGAACTACAATCATGGTGGAAGGAAGTGAGAGAGGAAGGGCATGGTGACCTGAAAGATGCACCCTGGTGGCCTAAGATGCTGACTCGT GAAGAGCTAATAGACTCATGCACCATAATCATATGGGTGGCATCAGCTCTCCATGCAGCTGTCAATTTTGGTCAGTACCCTTATGCAGGCTACCTTCCCA ATCGTCCAACCGTAAGCCGAAGGTTCATGCCCGAGGAAGGCTCTCCTGAATATGAGGAGCTCAAGTCGAACCCTGATAAGGCTTTCTTGAAAACAATCAC TGCACAGTTGCAAACACTTCTTGGAATTTCCCTCATAGAAATTCTGTCAAGGCATTCCTCAGATGAGGTGTATCTTGGACAGAGAGACACTCATGAATGG ACAGCAGACAAGAAACCATTAGAGGCGTTTGAGAAATTTGGAAAGAAACTGGCAGAAATCGAGGACAAAATGCTAGACATGAACAAAGCTGGGAAATGGA AGAATCGGGTCGGTCCAGTCGAGGTGCCATACACTTTGTTGGTTCCTACCAGTGAAGGTGGACTCACTGGAAGGGGAATTCCTAACAGCGTCTCACTCTA A
AA sequence Show only first row Show all	>Potri.005G032700.1 pacid=42805334 polypeptide=Potri.005G032700.1.p locus=Potri.005G032700 ID=Potri.005G032700.1.v4.1 annot-version=v4.1 MLHSIIDAITGDHSNGTKKMVKKIKGTVVLMKKNVLDFNDFNASVLDRVHEFLGQRVSLQLVSAVNSDPSENDLKGKLGEPAYLEEWITTITSLTAGESA FKVTFDWDEEIGVPGAFLIRNNHHSEFYLKTVTLEDVPGQGRVHFVCNSWIYPTTRYNYDRVFFTNQNYLPHETPAPLRKYREEELVKLRGDGKGELKEW DRVYDYAYYNDLGDPDKGAKYARPVLGGSSEYPYPRRGRTGRAPAKSDPNTESRQPLLMSLNIYVPRDERFGHLKMSDFLAYALKSVAQFIRPELEALCD STPNEFDSFDDVLDLYEGGFKLPDGPLLENLTKNIPVEMLKEIIPTDGEGLFRFPKPQVIQESNSAWRTDEEFGREMLSGVNPVIIRRLEEFPPKSKLDS KLYGDQNSTITEEHIKDSLDGLSIDEAIEKNRMFILDHHDALMPYLRRINTTTTKTYASRTLLFLKDDGTLKPLVIELSLPHEEGDEFGAISKVYTPAEH GVEGSIWDLAKAYVAVNDSGYHQLISHFLNTHAVSEPFVIATNRQLSVLHPIYKLLEPHFRDTMNINALARQTLINAGGILESTVYPAKYAMEMSSVIYR NWNFTEQALPEDLKKRGVAVEDPKSPHGVRLLIEDYPYAVDGLEIWSAIKEWVRDYCSFYYKNDEMIQKDSELQSWWKEVREEGHGDLKDAPWWPKMLTR EELIDSCTIIIWVASALHAAVNFGQYPYAGYLPNRPTVSRRFMPEEGSPEYEELKSNPDKAFLKTITAQLQTLLGISLIEILSRHSSDEVYLGQRDTHEW TADKKPLEAFEKFGKKLAEIEDKMLDMNKAGKWKNRVGPVEVPYTLLVPTSEGGLTGRGIPNSVSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032700 [exp]	0	1
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032400 [exp]	1.00	0.9764
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032600 [exp]	1.41	0.9587
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.001G099001 [exp]	2.23	0.9344
AT5G01750			Protein of unknown function (D...		Potri.016G131400 [exp]	2.44	0.9446
AT1G21326			VQ motif-containing protein (....		Potri.005G189300 [exp]	2.82	0.9439
AT1G47670			Transmembrane amino acid trans...		Potri.004G181200 [exp]	6.78	0.8910	PtrLHT8
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.011G130951 [exp]	8.36	0.8961
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Potri.002G191900 [exp]	12.40	0.9092	GA2.6
AT3G23440		EDA6, MEE37	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G068800 [exp]	13.41	0.9176
AT5G01750			Protein of unknown function (D...		Potri.016G131600 [exp]	14.49	0.9178

Compare expression of checked genes

Potri.005G032700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.