Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) AT1G70650 184 / 1e-50 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT5G17790 148 / 1e-36 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT1G48570 137 / 3e-34 zinc finger (Ran-binding) family protein (.1) AT1G53460 56 / 4e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022300 [exp] 1034 / 0 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 224 / 7e-64 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.015G038200 [exp] 179 / 1e-48 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 175 / 4e-46 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 160 / 3e-40 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.001G376900 [exp] 68 / 7e-12 AT1G53460 254 / 3e-83 unknown protein Potri.001G056000 [exp] 45 / 0.0001 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.010G170700 [exp] 44 / 0.0004 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015180 [exp] 497 / 5e-164 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 383 / 2e-122 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 207 / 4e-58 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009049 [exp] 191 / 5e-53 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10003580 [exp] 160 / 4e-43 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009681 [exp] 157 / 1e-41 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10013630 [exp] 147 / 4e-36 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 139 / 8e-34 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10031503 [exp] 89 / 4e-20 AT1G55040 105 / 2e-26 zinc finger (Ran-binding) family protein (.1) Lus10043289 [exp] 50 / 1e-06 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.005G033000.1 pacid=42803144 polypeptide=Potri.005G033000.1.p locus=Potri.005G033000 ID=Potri.005G033000.1.v4.1 annot-version=v4.1 ATGGCAAAAACACCATTCTCTCTCCTCCTCTTAAGACGCCTAACTCTCACTACCCAAAACCCTAAACCCCCACCACTATCTCTCCTCCTCTTTAACAACC TTTATCTTAAACCCTACTCAACCACCACAACTGCTAAGCCCTGGACAGAGCAACCAAAACCCAACTCTCTGTCTGGTCGAAAGAGCTTTGTCTTTGATCA AATTGATGCCACTGAACGTGAACGCGCTGAAAAGCTCAAAACCCTCCAAAAAATCCGTGCTTGGCGCCAATCCAAAGACACCCCACAAGAACAACAACAA GAAGCAGTTGCTGCCCAAAACCCAGAACTTGATGGGACTCAAAAAACAGAAATGATTGACTCTCAAGATGAAAAACTGGAATCTGGGCTACGTGATAATG GTGATTCTAGTGTTGATTTTGAAGAGTCTGGTTTGATTGAGTTGAAGAGGAAGGAAGTGGAGTTGGTGCATCCATGGCCGGAGTGGATAGAGCTGATGGA GAGGTTGGCGCAACAGCATTATTTTGATCCTAGTAGGAAAGTTGCGGACAATATGGTAGAAAGTTTGGGACTTGATGTTTCTGGGGTTGGGAATGAGAGT GATGGTGTTGGGATTGATTTTAATAATTTCAGGGCTGTACAGACTGCTTGTATTAATTTTGGCAAAGACCGGTTCGATATCTTCAGGTCGCTGTCAAGAC AGGATATTCAAATTTTGGTAGGCTATGGATGCCCAAACGTGAACAAGAAGGTTGTTTTCTCTTCAAAGCTTTTGAGGAAGCATGCCCACCTTGATGAAGG GGATGTTTGTAGTAACTGCCGTTTGAGGAGCTCATGTGAAAGTGGATATCTACTAACAAACAAAGAGGATGAGGCACGGACTATTGATCTTATGCGAGTT CTTTTAGCTTATGGTTTTGAATCCATAAATGGATCAGTAGCCAATAGGTTTCTTCTGAAGCAAAAACCTGTCAGAACTGTTGTTCGTAAGTTACTTCATG AGGTTGCAAAGTTGAGTGCAGTACCAATAGACCCAAATCTCCCCCCTCCAGTGATTAAAAGGCCTCCAACAAAAGTGAAACAACCTCCTACTCCTCCTAG GAAACTTGTCGGACGTGATGGCATTGATATGAAAAAGGGGGATTGGTTGTGTCCCAAATGTGACTTCATGAATTTCGCCAAGAATGCAGTGTGCTTACAA TGTGATGCGAAGCGGCCCAAGAGACAGTTGCTTCCAGGGGAATGGGAATGCCCAGAGTGTAACTTCTTAAATTATAGGAGAAACATGGCTTGTTTCCATT GTGATTGCAAGCGTCCACCAGATACATTCATGGAAAATAAAATGGAAGAAAGGCAGCATGGTAGCAGAACAAGGTCGGAGAAGATTGTCAGCCACCCAGA AGTTTCCAGTGCCTGTAATTTTGATTTCGATGACAATGAATCAGATGGGGCTGATGTTGCTGCTTTTGAGTATGCAGATTCCGCAGCTATAGTTGAAGAC TTACCTCTGGGGATTCAAACTCAGGAAGGAAATTCTGGACAGAATACAGATGATTTCAGTGGACCCAGAAGAATTTCAAGGGCATATTCTGTTCCTGAGC ATGATGGATTTGGAAGGGGGTTTGATGATTTTGATGATGAAGATGATATTGACAGTTATGAACTAGATACCCAAAATGATAAACCTGCACGGAAGGCTTC TCAAAACAATTTTTCTGACCAAGGGATTTCTGATTTGGAAGGAGATGGAGGTTCTGATTACAACTTGGGCATACGACTCAGGACAAGTCCTTCTGTTAAG CCATCAAAGCCCAAGCATCACAGAAGAGCTTTCTCTGGCTCTGATGACGAACTGGATATCGATTCAGATGAAGAGCGCTCTGTTCATCCAAAATGGAAAT CCAGTCATGTCGCTGATATTAGAAACAAAAATAGAGGTGGAGTTCCAACAGGTCCTTCCAAGGGATTAAGTTTTGGGTCAGATGAAGAACTTGAGCTTGA TTCTGATGTGGATGATGATTCTGGCTCCAGCCATAGGAGACAGGGTAGAAAGGGTTCAGGTAGAAGGAATTTTGAGAGAAATTCTGATTTGGATGATGCT TCCTTTTCTGGTTCAGAATCTGATAACAATCATCGACGTTCTTGGAGAAATAGAAGTGGAGGTAACAAATTGGAATCTGGTAGAAGAGGTAACCATTTTA GGGGTCGTGATCATGACTTTGTGAGAAACAATGAGATGAGATCCAAGGGTAAGATGGGTGATAGAAGAAAGTCTTGGGGTGATGATTTTGGTAGATCGTC ACCTGGTGCCCATGGTAAAAATAGTGGATTTCAAGGCACTGACTGTTCTGGGTGGAAAATGAATGGTGCAGGTGGTGATTCACGGAATTTTAATGGACCA AAACAAGAAGGATTTAGAAAACAGCAAGGAGGAAGATCGAATGAATGCAATACGGGCATGGATCCTGGTGAATTTAGAAATAGCCGACGTGTTATTGAAA GGTAA
AA sequence Show only first row Show all	>Potri.005G033000.1 pacid=42803144 polypeptide=Potri.005G033000.1.p locus=Potri.005G033000 ID=Potri.005G033000.1.v4.1 annot-version=v4.1 MAKTPFSLLLLRRLTLTTQNPKPPPLSLLLFNNLYLKPYSTTTTAKPWTEQPKPNSLSGRKSFVFDQIDATERERAEKLKTLQKIRAWRQSKDTPQEQQQ EAVAAQNPELDGTQKTEMIDSQDEKLESGLRDNGDSSVDFEESGLIELKRKEVELVHPWPEWIELMERLAQQHYFDPSRKVADNMVESLGLDVSGVGNES DGVGIDFNNFRAVQTACINFGKDRFDIFRSLSRQDIQILVGYGCPNVNKKVVFSSKLLRKHAHLDEGDVCSNCRLRSSCESGYLLTNKEDEARTIDLMRV LLAYGFESINGSVANRFLLKQKPVRTVVRKLLHEVAKLSAVPIDPNLPPPVIKRPPTKVKQPPTPPRKLVGRDGIDMKKGDWLCPKCDFMNFAKNAVCLQ CDAKRPKRQLLPGEWECPECNFLNYRRNMACFHCDCKRPPDTFMENKMEERQHGSRTRSEKIVSHPEVSSACNFDFDDNESDGADVAAFEYADSAAIVED LPLGIQTQEGNSGQNTDDFSGPRRISRAYSVPEHDGFGRGFDDFDDEDDIDSYELDTQNDKPARKASQNNFSDQGISDLEGDGGSDYNLGIRLRTSPSVK PSKPKHHRRAFSGSDDELDIDSDEERSVHPKWKSSHVADIRNKNRGGVPTGPSKGLSFGSDEELELDSDVDDDSGSSHRRQGRKGSGRRNFERNSDLDDA SFSGSESDNNHRRSWRNRSGGNKLESGRRGNHFRGRDHDFVRNNEMRSKGKMGDRRKSWGDDFGRSSPGAHGKNSGFQGTDCSGWKMNGAGGDSRNFNGP KQEGFRKQQGGRSNECNTGMDPGEFRNSRRVIER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55040			zinc finger (Ran-binding) fami...		Potri.005G033000 [exp]	0	1
AT3G18960	B3		AP2/B3-like transcriptional fa...		Potri.012G093200 [exp]	1.00	0.8526
AT1G17500			ATPase E1-E2 type family prote...		Potri.003G043300 [exp]	2.00	0.8419	Pt-ALA5.2
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.008G048900 [exp]	2.00	0.8203
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.018G019100 [exp]	3.74	0.8049
AT4G20310			Peptidase M50 family protein (...		Potri.003G157800 [exp]	5.47	0.8147
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.012G051200 [exp]	5.74	0.8301
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Potri.001G407300 [exp]	6.48	0.8124	Pt-MRE11.1
AT5G22010		ATRFC1	replication factor C 1, replic...		Potri.001G213900 [exp]	9.94	0.7977
AT4G01020			helicase domain-containing pro...		Potri.017G050100 [exp]	11.95	0.7915
AT1G31840			Tetratricopeptide repeat (TPR)...		Potri.015G036400 [exp]	12.00	0.8024

Compare expression of checked genes

Potri.005G033000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.