Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ANP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09000 681 / 0 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 658 / 0 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT3G06030 580 / 0 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G53570 295 / 7e-91 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 276 / 1e-81 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G66850 237 / 2e-68 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT3G13530 241 / 2e-67 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT4G08500 231 / 4e-67 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G07980 239 / 5e-67 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT4G08470 210 / 1e-59 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022700 [exp] 1113 / 0 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.008G149500 [exp] 697 / 0 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.010G092000 [exp] 684 / 0 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.007G106800 [exp] 294 / 2e-90 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 290 / 1e-88 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.001G102900 [exp] 274 / 1e-80 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 272 / 1e-79 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 271 / 1e-79 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 261 / 8e-76 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015185 [exp] 769 / 0 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10031506 [exp] 743 / 0 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10010519 [exp] 582 / 0 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10034060 [exp] 574 / 0 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10002096 [exp] 293 / 5e-86 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10032279 [exp] 270 / 2e-79 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 268 / 4e-79 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 269 / 7e-79 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 268 / 2e-78 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10000829 [exp] 259 / 7e-78 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G033400.1 pacid=42803468 polypeptide=Potri.005G033400.1.p locus=Potri.005G033400 ID=Potri.005G033400.1.v4.1 annot-version=v4.1 ATGCAAGACTTCTTTAGGAGATCATTAGCATTCCGTACACCCCCTCAAGATCATCCTGATCCTGATAATCCCAATCAAGAAAGTAATTACTGCAGTTCAA TTAATCCATTAACTTCAACATTAGTTGACAAGTTCAATTCTTGCGTTCGTAAATCAAGGATCTTTAGCAAACCCACTTCACCATCTTCACCTCCAATGCC TCCTCCGATCCGGTACCGTAAAGGGGAGTTGATTGGTTGTGGTGCATTTGGGCATGTTTATATGGGCATGAACTTTGATTCCGGAGAGCTTTTAGCAATA AAGCAGGTTTCGATTGCAGCTAATGGAGCTACAAGAGAGAAAGCTCAGGCTCACATCAGAGAGCTTGAGGAAGAAGTGAGGCTTCTACAGAATCTCTCCC ATCCCAACATTGTTAGATATTTGGGCGTAGTTCAGGAGGAGGAAACCATAAATATTCTGCTTGAATTTGTCCCAGGTGGATCGATATCATCTCTTTTGGG GAAATTTGGACCCTTCCCTGAGCCAGTTATAAGAACCTACACCAAGCAATTATTGCTGGGGTTGGAGTATTTACACAACAATGGAATTATGCACAGGGAC ATTAAGGGGGCAAACATTCTTGTAGATAATAAAGGATGCATCAAACTTGCAGATTTTGGTGCATCAAAACAGGTTGTGGAGTTGGCTACTGTTTCAGGGG CCAAATCTATGAAGGGCACACCATACTGGATGGCTCCTGAAGTCATTCTGCAGACGGGACATAGCTTCTCTGCTGATATATGGAGTGTTGGATGCACAGT CATTGAGATGGCCACTGGAAAGCCTCCTTGGAGCCAACAATACCAAGAGGTTGCGGCACTCTTTTATATAGGGTCGACAAAGTCTCATCCAGAAATCCCC AATCATCTCATTCCAGAGGCCAAAGATTTTCTGCTCAAGTGCTTGCACAAGGAACCAAATATGAGGCCAGAGGCATCTAAATTGCTGCAGCATCCATTTG TTACTGGGGAGATTGGCATATCTGATCATGTTACTCATAGTCCGGTGATGGAACTTTCTGGAATTCCTTTGCAGTCATATACCACTCACCCAGAAACCAT TCAAATGCCATCTGCCTATGACTCGATGGATGTCTGTAATTTGGGTAGTCTGAGCTGCTCAATGGATCCTGAGAAACTGTCTGAAAGTAAGGGTGCATTG GAAACACAAAACAGTGATGATGACATGTGTCGGATTGACAATGATTTTTCTACAAGTGAAGTAAAGCTCGGTCCTCTGTTGACTTCTAATGACTTCAATA AGAGTTCTGATCCCAAATGTGAGCTCTCTGGAGATTGGAGGTGCAAATATGATGAGAATCCAGAACTAGAACAAGCAGGCAAAAAATCAGACGCTGGTCA ACCAGTTCAGGGGGACAAAAATGCTTCATCTTACTGTGGGGCATCGCTTTCTGAGGATAATGAGGCACTTACTGAGTCAAAAATTAGAGCTTTTCTTGCT GAAAAGGCTTTGGAACTGAGGAAACTGCAAACACCTTTATATGAAGAGTTCTACAACAATTTGAATGCGCCTAGCTCTCCAAGTTTTGGTGGAAGTTCAC GTGATGAAACTCCTCCAAATTACTTGAAATTACCTCCTAAAAGCAGGTCACCCAGTCAAGTCCCTGTTGGAAGCCCATCTACATCAACTGATGCTGCTGT TAGCACCAGAAGTCCTGGGAGTAATAAACGTGCATCTAATGTTGGCAATGCAAGCGATCAAGCTTCCGAGGACAATTCATCCCCTCGGAGCAATGGTCGG AAAGGGCTTCCACTTGATGATCAACCAGAAACAGTTAATCCAAGTGTGAGACAAAGGAAGTGGAAAGAAGAGCTTGACCAAGAGCTCGAGAGCAAGAGAG AGATGATACGCCATGCAGGCTCGGGAAGTAAAACATCGTCTCCAAGGGATCGAGCATCAGGTCGGCAGCGAGAGCGGACAAGATTTGCATCTCCAAGCAA ATGA
AA sequence Show only first row Show all	>Potri.005G033400.1 pacid=42803468 polypeptide=Potri.005G033400.1.p locus=Potri.005G033400 ID=Potri.005G033400.1.v4.1 annot-version=v4.1 MQDFFRRSLAFRTPPQDHPDPDNPNQESNYCSSINPLTSTLVDKFNSCVRKSRIFSKPTSPSSPPMPPPIRYRKGELIGCGAFGHVYMGMNFDSGELLAI KQVSIAANGATREKAQAHIRELEEEVRLLQNLSHPNIVRYLGVVQEEETINILLEFVPGGSISSLLGKFGPFPEPVIRTYTKQLLLGLEYLHNNGIMHRD IKGANILVDNKGCIKLADFGASKQVVELATVSGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFYIGSTKSHPEIP NHLIPEAKDFLLKCLHKEPNMRPEASKLLQHPFVTGEIGISDHVTHSPVMELSGIPLQSYTTHPETIQMPSAYDSMDVCNLGSLSCSMDPEKLSESKGAL ETQNSDDDMCRIDNDFSTSEVKLGPLLTSNDFNKSSDPKCELSGDWRCKYDENPELEQAGKKSDAGQPVQGDKNASSYCGASLSEDNEALTESKIRAFLA EKALELRKLQTPLYEEFYNNLNAPSSPSFGGSSRDETPPNYLKLPPKSRSPSQVPVGSPSTSTDAAVSTRSPGSNKRASNVGNASDQASEDNSSPRSNGR KGLPLDDQPETVNPSVRQRKWKEELDQELESKREMIRHAGSGSKTSSPRDRASGRQRERTRFASPSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Potri.005G033400 [exp]	0	1	Pt-ANP1.2
AT2G03510			SPFH/Band 7/PHB domain-contain...		Potri.010G158700 [exp]	4.58	0.8897
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Potri.006G041400 [exp]	8.60	0.9150
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	9.89	0.9205
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Potri.002G057800 [exp]	13.07	0.9017	Pt-VCL1.3
AT4G17486			PPPDE putative thiol peptidase...		Potri.006G154400 [exp]	16.30	0.9038
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	16.88	0.9093
AT3G18060			transducin family protein / WD...		Potri.015G041200 [exp]	18.16	0.8958
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079300 [exp]	20.00	0.8870	CAS.3
AT3G12110		ACT11	actin-11 (.1)		Potri.008G055500 [exp]	25.88	0.9081	ACT4,Pt-PEAC14.2
AT3G12110		ACT11	actin-11 (.1)		Potri.010G204300 [exp]	25.92	0.9058	ACT5,Pt-PEAC14.3

Compare expression of checked genes

Potri.005G033400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.