Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27540 938 / 0 MIRO1, EMB2473 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) AT3G63150 792 / 0 ATCBG, MIRO2 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) AT3G05310 692 / 0 MIRO3 MIRO-related GTP-ase 3 (.1) AT4G35020 72 / 5e-14 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT2G44690 68 / 9e-13 ARAC9, AtROP8, ROP8 RHO-RELATED PROTEIN FROM PLANTS 8, Arabidopsis RAC-like 9 (.1) AT1G20090 66 / 3e-12 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT4G35950 66 / 4e-12 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT3G51300 66 / 5e-12 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT1G75840 66 / 6e-12 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT2G17800 64 / 1e-11 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023100 [exp] 1200 / 0 AT5G27540 932 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Potri.005G209000 [exp] 875 / 0 AT3G63150 847 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Potri.009G134600 [exp] 69 / 2e-13 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.014G051800 [exp] 67 / 2e-12 AT4G35020 324 / 3e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.004G174900 [exp] 67 / 2e-12 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.005G110700 [exp] 65 / 1e-11 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.007G061500 [exp] 65 / 1e-11 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.002G019500 [exp] 64 / 2e-11 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.019G092300 [exp] 64 / 2e-11 AT1G75840 337 / 9e-120 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029934 [exp] 1059 / 0 AT5G27540 971 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10031508 [exp] 1053 / 0 AT5G27540 951 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10004474 [exp] 1045 / 0 AT5G27540 970 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10015186 [exp] 1042 / 0 AT5G27540 932 / 0.0 embryo defective 2473, MIRO-related GTP-ase 1 (.1.2) Lus10022034 [exp] 837 / 0 AT3G63150 891 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Lus10042575 [exp] 831 / 0 AT3G63150 892 / 0.0 CALCIUM BINDING GTP-ASE, MIRO-related GTP-ase 2 (.1) Lus10034538 [exp] 70 / 2e-13 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10025959 [exp] 67 / 2e-12 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10033131 [exp] 66 / 3e-12 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014258 [exp] 67 / 4e-12 AT3G51300 394 / 1e-141 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family CL0023 [poplar] [flax] PF08355 [poplar] [flax] EF_assoc_1 EF hand associated CL0220 [poplar] [flax] EF_hand PF08356 [poplar] [flax] EF_assoc_2 EF hand associated
Representative CDS sequence Show only first row Show all	>Potri.005G033700.1 pacid=42802581 polypeptide=Potri.005G033700.1.p locus=Potri.005G033700 ID=Potri.005G033700.1.v4.1 annot-version=v4.1 ATGGCGAAAGCAGCGACGACGGCCAATCCTGGAGTTAAAAGTGGAGTGAGAATCGTTGTGGCCGGAGACCGAGGCACCGGCAAGTCTAGTTTGATTGTCA CTGCTATCTCCGAAACTTTTCCGTCGAGTGTTCCGCCGGTTCTTCCACCTACACGGATGCCTGATGATTTTTACCCTGACCGCGTTCCAATCACCATCAT CGATACCTCATCTAAAGTGGAGGATGCCGGTAAAGTAGCTGAAGAATTGAAGCGAGCTGATGCAGTTGTTCTTACATATGCATGTGACAGGCCAGAGACT CTTGATCGTTTGAGTACCTTTTGGCTTCCTGAGCTTCGTCAATTAGAGGTGAAGGTACCAGTTATAGTGGTGGGTTGTAAGTTGGATTTAAGAGACGAGA ACCAGCAAGTGAGCTTGGAGCAAGTAATGTCACCAATAATGCAACAGTTCCGGGAGATCGAAACTTGTATCGAGTGTTCGGCATTCAAACATATTCAGAT TCCTGAGGTTTTCTACTATGCACAAAAAGCAGTGCTTCACCCAACTGGTCCATTATTTGATCAGGAATCACAAACTTTGAAGCCCAGGTGTGTTAGAGCG TTGAAGCGTATATTCATTCTTTGTGATCTTGATAGGGATGGTGCCCTTAGCGATGCCGAGTTAAATGAATTTCAGGTCAAATGCTTCAACGCTCCATTGC AACCTTCTGAGATAATAGGTGTCAAGAGGGTTGTGGAAGAAAAGTTGCCTGGTGGAGGAGTCAGTGGTATGGGCGTCAATGACTGTGGCCTTACACTGAC AGGATTCCTCTTTCTCCATGCATTATTCATAGAAAAAGGGCGCCTTGAGACAACATGGACTGTACTTCGGAAATTTGGGTACAACAACGATATCAAACTT TCTGATGAATTAATTCCCACATTCAAACTAGCTCCTGATCAGAGTGTAGAACTCACCAGTGAAGCTGTCGAGTACTTGAGAAATATCTATGAACTGTTTG ACAGTGATGGTGATAACAACTTGCGACCTGCAGAACTAGAAGATATTTTCTCCACTGCACCGGAAAGCCCGTGGGAGGAACCTCCATATAAAGATGCTGC AGAGAAAACTGCATTGGGTGGGCTTTCAGCTAATGCTTTTTTGTCAGAGTGGGCCCTTATGACTCTTCTAGATCCATCTAGAGCTGTGGAGAATCTGATT TACATCGGATATTCTGGTGATCCTTCTGCTGCTGTCCGCTTGACAAGGAGAAGACGTTTAGATCGCAAGAAGAAACAGTCAGACAGAAATGTTTTCCATT GCTTTGTCTTTGGACCGAAAAAATCTGGAAAGTCTGCGTTAGTGAATTCTTTTATTGGAAGACCTTTTTATGATAGTTATGCTCCAACTGCCGAGGAAAT TTACGCGGTTAATGTTGTTGATCTACCTGGTGGAATAAAGAAAACCCTTGTGTTGAGAGAGATTCCTGATGATGGAGTTAAGAAACTCTTGTCAAATAAG GAGTCTTTGGCATCATGCGACATAGCAGTGTTTGTCTATGACAGTTCTGATCAGTCCTCGTGGAAGAGAGCGACAGAATTGCTTGTGGATGTTGCCAGCC ATGGTGAGGATACTGGATATGAGGTGCCATGCCTAATTGTGGCAGCTAAAGATGATCTGAACTCATTTCCAATGGCAATACAGGAATCTACCAGGGTTAG TCAGGATATGGGAATAGAGGCTCCAATCCCCATCAGTTCAAAGATGGGCGACACCAATAATGTGTTCCGTAGGATAGTAACTGCTGCTGAGCGCCCGCAT TTGAGCATTCCTGAAACTGAAGCAGGGAGAAGTCGCAAGCAATACAATCGACTTGTCAACCGCTCTCTCATGTTTGTTTCAGTTGGAGCTGCGGTGGCCA TTGTTGGGCTAGCAGCTTACCGAGTATATGCTGCGAGAAAGAACTCTTCTGGTTGA
AA sequence Show only first row Show all	>Potri.005G033700.1 pacid=42802581 polypeptide=Potri.005G033700.1.p locus=Potri.005G033700 ID=Potri.005G033700.1.v4.1 annot-version=v4.1 MAKAATTANPGVKSGVRIVVAGDRGTGKSSLIVTAISETFPSSVPPVLPPTRMPDDFYPDRVPITIIDTSSKVEDAGKVAEELKRADAVVLTYACDRPET LDRLSTFWLPELRQLEVKVPVIVVGCKLDLRDENQQVSLEQVMSPIMQQFREIETCIECSAFKHIQIPEVFYYAQKAVLHPTGPLFDQESQTLKPRCVRA LKRIFILCDLDRDGALSDAELNEFQVKCFNAPLQPSEIIGVKRVVEEKLPGGGVSGMGVNDCGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYNNDIKL SDELIPTFKLAPDQSVELTSEAVEYLRNIYELFDSDGDNNLRPAELEDIFSTAPESPWEEPPYKDAAEKTALGGLSANAFLSEWALMTLLDPSRAVENLI YIGYSGDPSAAVRLTRRRRLDRKKKQSDRNVFHCFVFGPKKSGKSALVNSFIGRPFYDSYAPTAEEIYAVNVVDLPGGIKKTLVLREIPDDGVKKLLSNK ESLASCDIAVFVYDSSDQSSWKRATELLVDVASHGEDTGYEVPCLIVAAKDDLNSFPMAIQESTRVSQDMGIEAPIPISSKMGDTNNVFRRIVTAAERPH LSIPETEAGRSRKQYNRLVNRSLMFVSVGAAVAIVGLAAYRVYAARKNSSG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.005G033700 [exp]	0	1
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.010G073600 [exp]	1.41	0.6982
AT3G51390			DHHC-type zinc finger family p...		Potri.005G104800 [exp]	2.82	0.6479
AT1G35220			unknown protein		Potri.002G100800 [exp]	5.09	0.6681
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112700 [exp]	10.00	0.6397
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G076601 [exp]	14.96	0.6310
AT5G57110		AT-ACA8, ACA8	"AUTOINHIBITED CA2+ -ATPASE, I...		Potri.018G139900 [exp]	16.12	0.5981
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Potri.018G033700 [exp]	18.16	0.6038
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.014G184801 [exp]	18.16	0.6258
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Potri.009G167600 [exp]	19.44	0.5935
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.004G229300 [exp]	23.47	0.5906	CAND1.3

Compare expression of checked genes

Potri.005G033700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.