Plant FIBer expression Database

Potri.005G033900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27490 468 / 2e-168 Integral membrane Yip1 family protein (.1)
AT3G05280 438 / 7e-157 Integral membrane Yip1 family protein (.1)
AT2G39805 170 / 1e-51 Integral membrane Yip1 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G023400
[exp]
491 / 1e-177 AT5G27490 423 / 6e-151 Integral membrane Yip1 family protein (.1)
Potri.008G060300
[exp]
172 / 2e-52 AT2G39805 335 / 1e-116 Integral membrane Yip1 family protein (.1.2)
Potri.010G198300
[exp]
170 / 1e-51 AT2G39805 321 / 9e-111 Integral membrane Yip1 family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004473
[exp]
464 / 3e-167 AT5G27490 474 / 4e-171 Integral membrane Yip1 family protein (.1)
Lus10029935
[exp]
462 / 2e-166 AT5G27490 473 / 8e-171 Integral membrane Yip1 family protein (.1)
Lus10015189
[exp]
443 / 1e-158 AT5G27490 464 / 4e-167 Integral membrane Yip1 family protein (.1)
Lus10031511
[exp]
442 / 3e-158 AT5G27490 462 / 3e-166 Integral membrane Yip1 family protein (.1)
Lus10004695
[exp]
146 / 3e-42 AT2G39805 324 / 2e-112 Integral membrane Yip1 family protein (.1.2)
Lus10001020
[exp]
130 / 2e-35 AT2G39805 322 / 1e-110 Integral membrane Yip1 family protein (.1.2)
Lus10030159
[exp]
102 / 2e-25 AT2G39805 256 / 6e-85 Integral membrane Yip1 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0112 Yip1 PF04893 Yip1 Yip1 domain
Representative CDS sequence
>Potri.005G033900.1 pacid=42805386 polypeptide=Potri.005G033900.1.p locus=Potri.005G033900 ID=Potri.005G033900.1.v4.1 annot-version=v4.1
ATGATGTCAGGAGGAGTAGGCAAATACACACACATTGATAATCAACCACAAGTCTCTGGATCTGTTCCTGCTGTTCCAGATCCCGGCCACGTCACCGTCC
AATTCACCGCAGATTCGAATCTGCAGACATTTCCTCCATCAGGTTCGCAGGGGAAGATCTCAGGTGGATCCCGCCCGCCTCGTGATGCTGATGATACGTT
TTCAAAACCTATTTCTGGTTCTGACGAACCCCAGCAAGGTGGTTGGTTTCGAACATTCACAATTGCTGCATACAAGCCATACTTTGATGTTGACACTACT
GAAGTTTTGGATAGGATCAAAGATTCACTTTTCCCATTTAGAGGAACTTTTACAGAAAAAACAGCCAACAACCCAGATCTGTATGGACCATTTTGGATAT
GCACCACCCTAATCTTTGTAGCGGCCTCCATTGGCACTTTTGTGACATATATAGCACACAAGCTGCAGAAGAAAGAATGGAACTATGACATAAATCTGGT
GACTTGGTCTGCTGGAGTGTTTTATGGCTATGTCCTTCTTGTTCCTCTTGCATTATATGTAATTCTCAAGTACTTTTCAGCACCATCAGGCCTTGTCCAA
CTGTTCTGTCTTTATGGCTACTCCTTATTTGTCTTTATTCCAGCATTGTGCCTCTCGGTGGTGCCCTTGGAAATTTTCAGATGGGTGATAGCAGGTGTGG
CAGGGTTCATGTCAGCAACCTTCGTGGCACTTAATCTCCGAGCCCATATTATGTCCGCAGGTGAAAGGTGGTTTTTGATCGTTGCCGGTATCTTTCTTTT
GCAGTTGGCTCTATCCGTTGTATTGAAGCTTTATTTGTTCACAGTTACTGTATAA
AA sequence
>Potri.005G033900.1 pacid=42805386 polypeptide=Potri.005G033900.1.p locus=Potri.005G033900 ID=Potri.005G033900.1.v4.1 annot-version=v4.1
MMSGGVGKYTHIDNQPQVSGSVPAVPDPGHVTVQFTADSNLQTFPPSGSQGKISGGSRPPRDADDTFSKPISGSDEPQQGGWFRTFTIAAYKPYFDVDTT
EVLDRIKDSLFPFRGTFTEKTANNPDLYGPFWICTTLIFVAASIGTFVTYIAHKLQKKEWNYDINLVTWSAGVFYGYVLLVPLALYVILKYFSAPSGLVQ
LFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGVAGFMSATFVALNLRAHIMSAGERWFLIVAGIFLLQLALSVVLKLYLFTVTV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G27490 Integral membrane Yip1 family ... Potri.005G033900
[exp]
0 1
AT3G06035 Glycoprotein membrane precurso... Potri.010G033400
[exp]
2.00 0.9637
AT5G27490 Integral membrane Yip1 family ... Potri.013G023400
[exp]
3.46 0.9557
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Potri.006G129200
[exp]
4.47 0.9534 Pt-FLA11.1
AT1G12000 Phosphofructokinase family pro... Potri.011G015600
[exp]
4.89 0.9591
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Potri.016G088700
[exp]
6.63 0.9540 Pt-FLA11.2
AT1G57560 MYB ATMYB50 myb domain protein 50 (.1) Potri.015G082700
[exp]
7.07 0.9476
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.008G100000
[exp]
7.34 0.9528 ARF1.3
AT5G18280 ATAPY2 apyrase 2 (.1.2) Potri.013G053500
[exp]
9.53 0.9513
AT1G24480 S-adenosyl-L-methionine-depend... Potri.010G052100
[exp]
9.53 0.9109
AT1G50120 unknown protein Potri.007G071000
[exp]
9.94 0.9461

Potri.005G033900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.