Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54920 332 / 6e-99 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023600 [exp] 1425 / 0 AT1G54920 341 / 5e-102 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029936 [exp] 457 / 4e-145 AT1G54920 296 / 3e-86 unknown protein Lus10004472 [exp] 422 / 1e-132 AT1G54920 291 / 7e-85 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G034100.1 pacid=42804011 polypeptide=Potri.005G034100.1.p locus=Potri.005G034100 ID=Potri.005G034100.1.v4.1 annot-version=v4.1 ATGAAGAAGAAAGAAGAATTATTTAGCGACTTCATATTCGCTCCGTCAGTTCACGCCGTTAATTACAATCCCACCATGATCAACGGCTCAGATTTCACCA ACACCAACAATACTGACGACGATGATTGGGGAGATTTCAATTTTGTCAGCAGCAATTCCAGTGGACTCTCCCACGCCTTATCGCTGCCCAGAATCTCAAA TACCGATTTTGAACCCTCTACAAAAAATCAAAAGGTGATCGAGTCACTGACTGATCCTGCATCGGCACCGAGTTTAGTTAATAACTTGACTCAGTGGGAC AAGCCAAAAGGAGCTCTGCCCCTTTCGATATTTGGAGAAATTGAGGAGGAGGAGGAGGAAGGATCAGGTTCGGGCGAGCCTAGAAAAAATGAAAGTTTTG ATTTTTTGAAAAATAAAGAGGGATCAGGTGTCATTGTGAGTGATTTGATAGCTAATTTATATAAAGAGAAGGAGAGGAATAATGGGTTCAGATCCAATTT TAATGGGCCGGATTTGAATTTGGGAAATTTGAATGGTAATGGATTGAATGTGAATGGTGTCAATAAGGGGGAATTGGATTCAAAGGGGTTGGGTTTGGAT TTGAAGGAAAATGGATTGAATTCGAATAAAATGGAATCAAATTTGATTAAGAGAGATGGGAATTTGAGTGGAAATGGAGTGGATTTCGGTTTGGTTCATG GTAATGAGGGATTTGATGATGATAAATGGGAATTTGAAGGTGCAGACAGTAAAACTGTTGTGGAGATTGAGATTTCTAAGGCTGGTGAAATGAGGACTGA GAATGGATTGGTATCGCATGTTAATGGATTAAATTCAAGTTGGAACCCTTTGAGCTTGGATTTGAATGGGTGGACATCGCATGTTAATGGAGATCATTCA GGTAGGGATTGGTTGAATAAGGGAACGGTTGATGGAAATAGAGCACTTGGTAACAGCGATGGGTGGGAGTTCAAAGAAACAGGTTCCAAAATGCAGGCTA GAGATGAGAAAGAGAAGGGTGAGCAGATCGAGACTGAAATCAAGCCAACATTGAGTTTTGATGGATCCAACTCAACCTGGAATGGTTTGGATGGATTAAC AAATTCAAACTTAAATGATGTGAATTCAGATATAAAACAGATGAATCCAATTTCACATGATGAAAATGAGGGTTTTAGTGGAGATGATGAGTGGGACTTC AAGGCTGCAGAAGCAGAATTTGGGACTGGAGATGGGAATACTAAGGGTGATGGGAGAAGGGTGGAAAACACAGAGGGAGCTACATACGCATTTGGATTTG GTAGTGGGATGCTTGGTGCTGGTGATTTATCTGGTGCATCACAACAGACCTCTCAAAAATCTACTGAATGGGACTTTGGATTTGATTCCACCCCTGCTTT AGCTCAAGACACTACCATGTCCCATCCATTCTCTGAAAATGAGCAGAACAACACCAAAAAGGGCTTGCATTCCTCCCCAGATGATGGAGTTGATGCTGAT GAAGAGTCTTGGGAATTTAAAGATGCATTTTCACAAACTGGATCAAAAAATAAGGAAGAGCCAAAGGTTGTTGAAGTTTCTACTGCTGTGGAAGCATTTC CATCTGATGGTGAAATCAAGGGAAACATGGCAAGGTCAATCAGTCAAAATGGAGCTCTGCCTTTGTCCATTTTTGGTGATGAAGAAGAGGATTCCAATGA TCCTGTGAGTTATCAAGACATTTCATCTGAGCTGCCTGATTCCAAGCCAATAGATGGCATTAAAAGTCCTCATTCAAACTTTGCTATCAATGATCTTATA TCAAGTTTGTACAGTCAAGCTGAGCAGAATACTGCCATTATTAATGGCCAAAACCCCAGTGGAAATGGATTGAGCCTCATCAATGCTACAATGGAGTCTA ATTTAGCAGGTGACAATGATGATTTTGATGATGATTCCTGGGAATTTAAAGTTGCCTCTTCAGGGACCAGAGCTGAAGACCAGGCCTCTTTTATTGGTCT TGGAGAGGCTAATACTGACTGTTCCTCCAAAACAGAGCTAAATGATTATGTCGATTTCTTTTGTAAATTGAAGGAAGAATTGCACTGTCTTGCCCTGTGT CATCTTGATAATCTAAAGAAAGCTCAAAGTGCTGCTAGTGAAGATGCTGAAGTAAAAGCCCTTGAAAAGGAAATACAGAATCTTCATGATGAACTGTGCC GAGATGGTTTGTTTTCTGGTGAAGTTGACTCAGGGAATCACTCCCCAAAAAAATTGTGCCTGAATGAATTTGTTGAAGTTTTGCAAGAACCAAAGTACCA AGGGTTTGAATCAGAATATCAGTTATCAAGTAAATTGTCATTGGTGGAGAATGATTTGAGATTGACAATGGAATTCCTCAAACATGTGGCATCAACAATA AAGATTTTGACATTGGTATCAAGAGAGGAGCAATCTTGTTATATTTCCACTTGGTCTGAAATCCTGTCTGTTTGTGCTAGAGAGCTGAAACATGGCGCCA TAATTTGGACGCAGTCATTACAAAAAGATGTCCATGATCAAATATTATCTAAGCCTCAAGGCAAGAACTATATCGTTGCCCTTGGAGAAATTTACAGAGT TATTGAAGTTATTGGGTCTTCAGCCAGACTTTATAAGCCATGGGTTTTAGTTAGTTCTACAGATCCCATGGGCTTGTTCACTCTTCTAAGTGAGTGTTCC ACCCTATGGTCAGGTTCTGGACTTGAAGAAGCTCTGCAGAGCATTTCTGATCCTTCTGGTGCTGATTGTAATCGAGATCTCACTACATTAATAGAGTCTA TTAAGAATATTCACAATCTTGATACTCTGACGCTATATAACCATGTTTTTTGTGGACAAGGCCCTATCTGTCGACTGTCAGTCTTAGCTGCAGGAGCAGT GCCAGGGATGAAGATGGTGGTTTGGAATGGGGAGCACTACTTTCTCCCACTTGCTAATTTGTGGGCAAATTTAGTAAGCTGCAACCCTCCAAATTTTCCA CACATACATGTTGGATGA
AA sequence Show only first row Show all	>Potri.005G034100.1 pacid=42804011 polypeptide=Potri.005G034100.1.p locus=Potri.005G034100 ID=Potri.005G034100.1.v4.1 annot-version=v4.1 MKKKEELFSDFIFAPSVHAVNYNPTMINGSDFTNTNNTDDDDWGDFNFVSSNSSGLSHALSLPRISNTDFEPSTKNQKVIESLTDPASAPSLVNNLTQWD KPKGALPLSIFGEIEEEEEEGSGSGEPRKNESFDFLKNKEGSGVIVSDLIANLYKEKERNNGFRSNFNGPDLNLGNLNGNGLNVNGVNKGELDSKGLGLD LKENGLNSNKMESNLIKRDGNLSGNGVDFGLVHGNEGFDDDKWEFEGADSKTVVEIEISKAGEMRTENGLVSHVNGLNSSWNPLSLDLNGWTSHVNGDHS GRDWLNKGTVDGNRALGNSDGWEFKETGSKMQARDEKEKGEQIETEIKPTLSFDGSNSTWNGLDGLTNSNLNDVNSDIKQMNPISHDENEGFSGDDEWDF KAAEAEFGTGDGNTKGDGRRVENTEGATYAFGFGSGMLGAGDLSGASQQTSQKSTEWDFGFDSTPALAQDTTMSHPFSENEQNNTKKGLHSSPDDGVDAD EESWEFKDAFSQTGSKNKEEPKVVEVSTAVEAFPSDGEIKGNMARSISQNGALPLSIFGDEEEDSNDPVSYQDISSELPDSKPIDGIKSPHSNFAINDLI SSLYSQAEQNTAIINGQNPSGNGLSLINATMESNLAGDNDDFDDDSWEFKVASSGTRAEDQASFIGLGEANTDCSSKTELNDYVDFFCKLKEELHCLALC HLDNLKKAQSAASEDAEVKALEKEIQNLHDELCRDGLFSGEVDSGNHSPKKLCLNEFVEVLQEPKYQGFESEYQLSSKLSLVENDLRLTMEFLKHVASTI KILTLVSREEQSCYISTWSEILSVCARELKHGAIIWTQSLQKDVHDQILSKPQGKNYIVALGEIYRVIEVIGSSARLYKPWVLVSSTDPMGLFTLLSECS TLWSGSGLEEALQSISDPSGADCNRDLTTLIESIKNIHNLDTLTLYNHVFCGQGPICRLSVLAAGAVPGMKMVVWNGEHYFLPLANLWANLVSCNPPNFP HIHVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54920			unknown protein		Potri.005G034100 [exp]	0	1
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Potri.001G472700 [exp]	1.00	0.8534
AT5G47490			RGPR-related (.1)		Potri.001G157800 [exp]	3.46	0.7666
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.013G142301 [exp]	4.89	0.7118
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.001G096320 [exp]	6.32	0.6971
AT1G53190			RING/U-box superfamily protein...		Potri.001G373700 [exp]	8.24	0.6454
AT1G30760			FAD-binding Berberine family p...		Potri.011G158700 [exp]	16.79	0.6898
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.001G205500 [exp]	21.00	0.6743	KUP7.1
AT1G76520			Auxin efflux carrier family pr...		Potri.003G108100 [exp]	25.45	0.6419
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.005G214400 [exp]	25.76	0.6719
AT1G70060		SNL4	SIN3-like 4 (.1)		Potri.010G038700 [exp]	32.32	0.6605

Compare expression of checked genes

Potri.005G034100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.