Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27450 495 / 4e-176 MVK, MK mevalonate kinase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G024000 [exp] 676 / 0 AT5G27450 484 / 6e-172 mevalonate kinase (.1.2.3) Potri.015G125201 [exp] 90 / 1e-22 AT5G27450 56 / 5e-11 mevalonate kinase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015168 [exp] 588 / 0 AT5G27450 513 / 0.0 mevalonate kinase (.1.2.3) Lus10031513 [exp] 581 / 0 AT5G27450 511 / 0.0 mevalonate kinase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00288 [poplar] [flax] GHMP_kinases_N GHMP kinases N terminal domain CL0677 [poplar] [flax] GHMP_C PF08544 [poplar] [flax] GHMP_kinases_C GHMP kinases C terminal
Representative CDS sequence Show only first row Show all	>Potri.005G035300.1 pacid=42802958 polypeptide=Potri.005G035300.1.p locus=Potri.005G035300 ID=Potri.005G035300.1.v4.1 annot-version=v4.1 ATGGAAGTGAAAGCAAGAGCTCCAGGAAAAATAATTCTTTCTGGTGAACATGCAGTTGTTCATGGATCCACTGCTGTTGCTGCATCCATTGATCTATACA CCTATGTTTCCATTCAAGTTCTCCCTTCCACTGAGAATGATGATAGACTGACACTCCAGCTCAAGGATATGGCTTTAGCATTTTCTTGGCCAATTGGAAG AATCAAAGAATCACTATCTAGCTTAGGAGGCCCTTTCCCTTCAACTCCCACGTCCTGCTCAACAGCATCAATGAAGTTAATTTTAGCTTTGGTTGAAGAA CAAAATATTCCGGAGGCAAAAATTTCTCTTGCTTCTGGAGTGACGGCTTTTTTGTGGCTATACACATCTATCCTAGGATTTAAACCTGCCACTGTAGTCG TCACTTCTGAACTTCCACTCGGTTCTGGCCTGGGTTCATCTGCTGCCCTTTGTGTTGCATTCTCAGCAGCTCTTCTTGCTTGCTCAGACTCTGTAAACGT GGACATGAAACAACAAGGGTGGTTAATTGTTGGGGAGTCTGAGCTTGAATTATTGAACAAATGGGCTTTTGAAGGTGAAAAGCTAATTCATGGAAAGCCA TCTGGGATTGACAACACTGTTAGCACTTATGGCAATATGATCAAGTTCAGGTCAGGTAATTTAACACGTATCAAGTCCAGCATGCCCCTCAAAATGCTCA TTACTAACACAAAAGTTGGGAGGAACACAAAAGCATTGGTTGCTGGAGTTTCAGAAAGAACCTTAAGACACCCTGATGCCATGAATTCTGTTTTTAATGC CGTTGATTCCATCAGTAAGGAATTGGCTAATGTCATCCAGACACCTGCTCCAGATGATCTGTCCCTGACTTCGAAGGAAGAGAAGTTGGAAGAGTTAATG GAAATGAATCAAGGTTTGCTTCAATGCATGGGGGTAAGCCATGCTTCTATAGAAACTGTTCTTCGAACAACATTGAAATACAAGTTAGCTTCTAAGTTGA CTGGAGCTGGAGGTGGTGGCTGTGTGCTGACATTGTTGCCGACCTTACTGTCAGGAACAATTGTAGATAAAGTAATTGCTGAGCTGGAGTCTTGCGGATT CCAATGTTTGATTGCTGGAATTGGCGGGAATGGTGCTGAGATTTGCTTCGGTGCTTCATCCTGA
AA sequence Show only first row Show all	>Potri.005G035300.1 pacid=42802958 polypeptide=Potri.005G035300.1.p locus=Potri.005G035300 ID=Potri.005G035300.1.v4.1 annot-version=v4.1 MEVKARAPGKIILSGEHAVVHGSTAVAASIDLYTYVSIQVLPSTENDDRLTLQLKDMALAFSWPIGRIKESLSSLGGPFPSTPTSCSTASMKLILALVEE QNIPEAKISLASGVTAFLWLYTSILGFKPATVVVTSELPLGSGLGSSAALCVAFSAALLACSDSVNVDMKQQGWLIVGESELELLNKWAFEGEKLIHGKP SGIDNTVSTYGNMIKFRSGNLTRIKSSMPLKMLITNTKVGRNTKALVAGVSERTLRHPDAMNSVFNAVDSISKELANVIQTPAPDDLSLTSKEEKLEELM EMNQGLLQCMGVSHASIETVLRTTLKYKLASKLTGAGGGGCVLTLLPTLLSGTIVDKVIAELESCGFQCLIAGIGGNGAEICFGASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Potri.005G035300 [exp]	0	1
AT4G02630			Protein kinase superfamily pro...		Potri.005G139500 [exp]	3.46	0.9166
AT1G04650			unknown protein		Potri.003G175300 [exp]	3.87	0.9170
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	7.14	0.9031
AT1G79670		WAKL22, RFO1	RESISTANCE TO FUSARIUM OXYSPOR...		Potri.001G040000 [exp]	8.36	0.8789
AT1G79670		WAKL22, RFO1	RESISTANCE TO FUSARIUM OXYSPOR...		Potri.001G041012 [exp]	11.22	0.8576
AT5G27220			Frigida-like protein (.1)		Potri.005G044200 [exp]	12.40	0.8694
AT2G30690			Protein of unknown function, D...		Potri.002G042500 [exp]	13.96	0.8478
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	15.96	0.8858
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	17.94	0.8668
AT3G51470			Protein phosphatase 2C family ...		Potri.005G102500 [exp]	18.00	0.8747

Compare expression of checked genes

Potri.005G035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.