Plant FIBer expression Database

RZF.2 (Potri.005G035600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol RZF.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05250 308 / 6e-106 RING/U-box superfamily protein (.1)
AT2G39100 59 / 6e-10 RING/U-box superfamily protein (.1)
AT1G67180 44 / 6e-05 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1)
AT3G05670 44 / 8e-05 RING/U-box protein (.1)
AT3G58030 41 / 0.0006 RING/U-box superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G021000
[exp]
47 / 1e-05 AT3G05670 436 / 2e-140 RING/U-box protein (.1)
Potri.013G011400
[exp]
44 / 6e-05 AT3G05670 417 / 7e-133 RING/U-box protein (.1)
Potri.004G106000
[exp]
42 / 0.0002 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004467
[exp]
342 / 3e-119 AT3G05250 288 / 9e-98 RING/U-box superfamily protein (.1)
Lus10029940
[exp]
266 / 7e-90 AT3G05250 227 / 3e-74 RING/U-box superfamily protein (.1)
Lus10010911
[exp]
139 / 5e-39 AT3G05250 118 / 4e-31 RING/U-box superfamily protein (.1)
Lus10034165
[exp]
56 / 8e-09 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1)
Lus10034088
[exp]
47 / 1e-05 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1)
Lus10031468
[exp]
44 / 0.0001 AT3G05670 343 / 2e-107 RING/U-box protein (.1)
Lus10015213
[exp]
42 / 0.0003 AT3G05670 368 / 2e-112 RING/U-box protein (.1)
Lus10001535
[exp]
41 / 0.0007 AT4G10940 189 / 4e-59 RING/U-box protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence
>Potri.005G035600.1 pacid=42802860 polypeptide=Potri.005G035600.1.p locus=Potri.005G035600 ID=Potri.005G035600.1.v4.1 annot-version=v4.1
ATGGACCAACAAGACTCTAACAGCAACAAAGAGAATCAATCTTGCTCTTCAAGTGATTCAAATCCATGCCCCATATGCCTTGCTCCTTTCCTTCAAGAAT
CCTATCTTGACACTTGCTTCCATAAATTTTGTTACAAATGCATTTTACAATGGACTAAAGTAGTTTCTCGCAAGGAATCTCGGCGGCCTTCTTCTGTTAA
ATGTCCTTTATGCAAGACGGATAATTTTTCGTTAATTTATGGATATGATGGAAGTTCATTCCAACGACATTATGTAAATCAGGGTTTTGAGGACAGTTCA
TTCTTTTCAAAAGCACACAAGTACAGATTACAGTGCTATTATACTGAACCAGGTATCCTGAATGACGCAATTAATGTATCACGATATTGGAAGTTGCGCA
AGTATCTTCAGCCAAATCGATGGCTGCAAAGTTGGCTGAGAAGAGAAGTTCAAGCTCTGCTGCAGGAAGAGGATATTGAAGTCATTCTATATCATATTCT
TGGTACGGTCAATTCATTCTTTAGCAGAAATGAACACATGCGTCAAACAAAAACACCTGAAACGAAACAAGAAGAGTTCAAGGCTGTAGTATCTAATGCA
GCGAGGCCTTTTCTAACAGCAAAAACAGATCGATTCGTGATAGAGTTGGAATTGTTTCTTGCTTCAGGTTTGAACATTGAAGCCTATGATGAAGTCTACC
TGCAGCAAATGGGTTGGAACACTCCAAAAACCACTGAGGCTGGAGGAGAATCTATTGAACACAACCCCGTAGTTCCGTACTTGTATATCTTTGATGCCAA
CTCTGAAAACGATTGA
AA sequence
>Potri.005G035600.1 pacid=42802860 polypeptide=Potri.005G035600.1.p locus=Potri.005G035600 ID=Potri.005G035600.1.v4.1 annot-version=v4.1
MDQQDSNSNKENQSCSSSDSNPCPICLAPFLQESYLDTCFHKFCYKCILQWTKVVSRKESRRPSSVKCPLCKTDNFSLIYGYDGSSFQRHYVNQGFEDSS
FFSKAHKYRLQCYYTEPGILNDAINVSRYWKLRKYLQPNRWLQSWLRREVQALLQEEDIEVILYHILGTVNSFFSRNEHMRQTKTPETKQEEFKAVVSNA
ARPFLTAKTDRFVIELELFLASGLNIEAYDEVYLQQMGWNTPKTTEAGGESIEHNPVVPYLYIFDANSEND

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05250 RING/U-box superfamily protein... Potri.005G035600
[exp]
0 1 RZF.2
AT1G65420 NPQ7 NONPHOTOCHEMICAL QUENCHING 7, ... Potri.008G076900
[exp]
8.48 0.9228
AT2G36670 Eukaryotic aspartyl protease f... Potri.016G096700
[exp]
8.83 0.8741
Potri.012G008845
[exp]
11.22 0.9287
AT4G02210 unknown protein Potri.005G252500
[exp]
12.24 0.8763
AT3G55870 ADC synthase superfamily prote... Potri.008G066600
[exp]
17.88 0.9273 Pt-ASA1.1,ASA%2C,pseudogene
Potri.012G007866
[exp]
18.16 0.9269
AT1G79915 Putative methyltransferase fam... Potri.001G181200
[exp]
21.90 0.8626
AT5G64816 unknown protein Potri.005G156400
[exp]
23.45 0.8547
Potri.005G196000
[exp]
26.32 0.8615
AT4G32090 Beta-1,3-N-Acetylglucosaminylt... Potri.004G167900
[exp]
27.20 0.8004

Potri.005G035600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.