Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74630 884 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 494 / 2e-166 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 486 / 2e-164 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 476 / 8e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G04840 469 / 9e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 460 / 6e-155 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 456 / 2e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 458 / 1e-152 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 455 / 2e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 455 / 1e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105700 [exp] 515 / 2e-175 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 504 / 3e-171 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 498 / 3e-168 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 498 / 4e-168 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 493 / 5e-166 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G316500 [exp] 489 / 5e-165 AT1G04840 728 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 487 / 2e-164 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 483 / 6e-164 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 482 / 4e-162 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023592 [exp] 929 / 0 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024222 [exp] 674 / 0 AT1G74630 719 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 505 / 1e-171 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 504 / 2e-171 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 499 / 2e-169 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 496 / 4e-168 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 487 / 1e-164 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 483 / 2e-162 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 482 / 5e-162 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 478 / 8e-162 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.005G035900.1 pacid=42804676 polypeptide=Potri.005G035900.1.p locus=Potri.005G035900 ID=Potri.005G035900.1.v4.1 annot-version=v4.1 ATGAGCAAGACAGAACCTCTGTGTCTGTCTTTGTTGAATATTTGCAAGAGCCTGACAACTTTCAAACAAATCCACGCCAATGTTCTCAAACTCGGCCTTG AATCTGACCCTTTCATCGCAGGAAAGCTACTGCACCATTGTGCGATTTCGCTCTCTGATTCTCTGGACTATGCTTGCCGCCTCTTTCGCTACACTCCAAA CCCAGATGTTTTCATGCACAACACTCTCATTAGAGGACTTTATGAGTCAGATAGACCCCAGGATTCACTTCTTAAGTTCATTGAAATGAGGAGGAACTCC TTTTCTCCTCCTGACAGTTTCTCTTTCGCTTTTATTGTCAAAGCGGCGGCGAATTTGAGGTCTGTGAGAGTTGGGATCCAGTTGCATTGTCAAGCATTGG TTCATGGGCTTGATACCCATCTTTTTGTTGGGACGACTTTGATTAGTATGTATGGGGAGTGCGGGTTTGTTGGGTTTGCGAGGAAGGTATTTGATGAAAT GCCTGAGCCAAATGCGATTGCCTGGAATGCGATGGTCACTGCGTGTTGTAGGGGTGGTGATATGAAGGGTGGAAGAGAATTGTTTGACTTGATGCCTGTT CGGAACTTGATGTCGTGGAATGTTATGCTTGCTGGGTACACGAAAGCTGGGGAGCTGGAACTGGCTAGGGAGATGTTTTTGGAGATGCCAATGAAGGATG ATGTCTCGTGGAGTACCATGATTGTTGGTTTTGCTCATAATGGGTATTTTGAAGAGGCTTTTAGTTTTTTCAGAGAGCTGCAGAGGAAGGGGATGAGGCC GAATGAGACAAGCTTAACTGGGGTGCTTTCAGCGTGTGCACAGGCAGGTGCACTTGAGTTTGGCAAAATATTACATGGCTTTATTGAGAAATCTGGGTTG GCTTGGATTGTATCAGTTAACAATGCATTATTGGATACTTATTCCAAGTGTGGGAATGTACTTATGGCTCAACTAGTTTTCGAGCGAATAATGAATGAAA GAAACATTGTTTCTTGGACTTCGATGATGGCTGCGCTCGCAATGCATGGTCATGGAGAAGAAGCAATTGGGATCTTTCATAAGATGGAAGAGTCTGGAAT TAGACCTGATGAGATTGCCTTTATTTCACTTTTATATGCTTGTAGTCATGCTGGATTGGTCGAACAAGGATGTGAATATTTTGATAAGATGAAAGGCATG TACAATATAGAACCATCTATTGAGCATTATGGTTGCATGGTTGATCTATATGGTCGGGCTGGTCAACTTCAGAAGGCCTATGAATTTGTTTGTCAAATGC CAATTCCATGTACTGCAATTATTTGGCGGACACTTCTTGGGGCTTGCAGCATGCATGGTGATGTTAAGTTGGCGGAACAAGTGAAAGAAAGACTTTCAGA GCTAGACCCCAACAACTCTAGTGACCATGTTCTGCTGTCAAATGCTTATGCAGTTGCAGGGAAATGGAAGGATGCAGCTTCTGTGAGAAGATCAATGACT GAACAGAGAATCACCAAAACTCCTGGTTGGAGCATGATTGAAGTTGACAAAATCATGTATACTTTCTTGGCAGGCACAAAACAATATAAGATTACAGAAG AGGCTTACAAGAAGCTAAAGGAGATTATAAGGAGGCTTAGGGTTGAAGGGGGTTATGTTCCAGAGATTGGAAGGGTTTTACATGACATAGAAGAGGAAGA AAAGGAAGGTTCAGTGTCAGTGCATAGCGAAAAGCTTGCTGTAGCTTTTGGTATTGCAAGGTTGTGCAAGGGGAGGACTATAAGAATAGTTAAGAATTTG AGGATTTGCAGGGACTGTCATGCAGTGATGAAGCTTATTTCTCAGATTTATAAAGTGGAGATCGTGGTGAGAGATAGAAGCCGCTTTCACTCTTTCAAGG ATGGTTATTGTTCATGCAGAGATTACTGGTAA
AA sequence Show only first row Show all	>Potri.005G035900.1 pacid=42804676 polypeptide=Potri.005G035900.1.p locus=Potri.005G035900 ID=Potri.005G035900.1.v4.1 annot-version=v4.1 MSKTEPLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNS FSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPV RNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGL AWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGM YNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMT EQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNL RICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74630			Tetratricopeptide repeat (TPR)...		Potri.005G035900 [exp]	0	1
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.017G144900 [exp]	13.63	0.8035
AT5G05210			Surfeit locus protein 6 (.1.2)		Potri.008G173300 [exp]	23.45	0.8373
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.007G040100 [exp]	25.69	0.8452
AT4G10270			Wound-responsive family protei...		Potri.013G147900 [exp]	27.92	0.8141
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.006G199400 [exp]	28.74	0.8331	CPK20.1
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Potri.001G364500 [exp]	28.98	0.8193
AT1G50670			OTU-like cysteine protease fam...		Potri.001G435500 [exp]	29.66	0.8000
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Potri.005G165400 [exp]	31.41	0.8127
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Potri.003G104900 [exp]	40.14	0.8212	EIF2.4
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.010G052150 [exp]	44.59	0.8179

Compare expression of checked genes

Potri.005G035900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.