Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SPP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27430 252 / 3e-87 Signal peptidase subunit (.1) AT3G05230 244 / 6e-84 Signal peptidase subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G058000 [exp] 271 / 2e-94 AT5G27430 252 / 6e-87 Signal peptidase subunit (.1) Potri.006G234600 [exp] 261 / 2e-90 AT5G27430 266 / 2e-92 Signal peptidase subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001092 [exp] 252 / 7e-87 AT5G27430 303 / 3e-107 Signal peptidase subunit (.1) Lus10040138 [exp] 251 / 9e-87 AT5G27430 301 / 1e-106 Signal peptidase subunit (.1) Lus10004463 [exp] 207 / 3e-68 AT5G27430 254 / 5e-87 Signal peptidase subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04573 [poplar] [flax] SPC22 Signal peptidase subunit
Representative CDS sequence Show only first row Show all	>Potri.005G036200.1 pacid=42804117 polypeptide=Potri.005G036200.1.p locus=Potri.005G036200 ID=Potri.005G036200.1.v4.1 annot-version=v4.1 ATGCATACGTTCGGATATAGAGCGAACGCGTTGCTAACGTACGCCTTGACTATACTGGCTTTAATGTGTACTATCGCTTCTTTCTCTGACAACTTCAATT TTCCTTCTCCTTCTGCTGAAATCCAGGTGTTGAATTTCAATTGGTTTCAAAAGCAGCCGCATGGAAATGATGAGGTCAGCCTCACCATGAATATAACAGC TGATTTACAGTCACTTTTTACATGGAACACAAAGCAGCTTTTCATATTTGTAGCAGCAGAGTATGAAACCCCCCAGAATTCAGTGAATCAGGTGTCACTT TGGGATGCCATTATACCTGCTAAAGAGCATGCAAAGTTTTGGTTTCAGACCGCAAACAAGTATCGTTTTGTTGATCAGGGAAGCAATCTTCGTGGTAAAG AATTTAACTTGACATTGCACTGGCATGTCATGCCCAAAACTGGCAAGATGCTTGCCGACAAGTTGGTCATGTCTGGATTCCGCTTGCCTGAGGAGTATAG ATGA
AA sequence Show only first row Show all	>Potri.005G036200.1 pacid=42804117 polypeptide=Potri.005G036200.1.p locus=Potri.005G036200 ID=Potri.005G036200.1.v4.1 annot-version=v4.1 MHTFGYRANALLTYALTILALMCTIASFSDNFNFPSPSAEIQVLNFNWFQKQPHGNDEVSLTMNITADLQSLFTWNTKQLFIFVAAEYETPQNSVNQVSL WDAIIPAKEHAKFWFQTANKYRFVDQGSNLRGKEFNLTLHWHVMPKTGKMLADKLVMSGFRLPEEYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27430			Signal peptidase subunit (.1)		Potri.005G036200 [exp]	0	1	Pt-SPP.1
AT5G27430			Signal peptidase subunit (.1)		Potri.018G058000 [exp]	2.44	0.8394	SPP.2
AT5G09570			Cox19-like CHCH family protein...		Potri.001G282900 [exp]	3.74	0.8387
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.011G096300 [exp]	5.65	0.8456
AT2G37600			Ribosomal protein L36e family ...		Potri.004G057000 [exp]	10.77	0.8684	RPL36.1
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.001G335700 [exp]	12.48	0.8287	Pt-PHB3.2
AT5G59850			Ribosomal protein S8 family pr...		Potri.008G051900 [exp]	16.12	0.8436	WRP15.3
AT5G52650			RNA binding Plectin/S10 domain...		Potri.013G027900 [exp]	16.43	0.8456
AT1G30580			GTP binding (.1)		Potri.001G465900 [exp]	17.14	0.7946
AT4G39880			Ribosomal protein L23/L15e fam...		Potri.005G075500 [exp]	18.97	0.7986
AT3G03100			NADH:ubiquinone oxidoreductase...		Potri.019G051400 [exp]	19.33	0.8295

Compare expression of checked genes

Potri.005G036200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.