Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) AT5G19080 296 / 4e-97 RING/U-box superfamily protein (.1) AT3G09770 248 / 2e-78 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT3G53410 231 / 6e-73 RING/U-box superfamily protein (.1) AT5G03200 218 / 2e-67 RING/U-box superfamily protein (.1) AT1G59560 56 / 2e-08 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT4G24204 48 / 1e-06 RING/U-box superfamily protein (.1.2.3) AT3G23280 50 / 2e-06 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT2G38195 49 / 4e-06 RING/U-box superfamily protein (.1.2) AT5G04460 49 / 9e-06 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025400 [exp] 528 / 0 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 324 / 4e-108 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 319 / 5e-106 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.006G128700 [exp] 270 / 2e-87 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.016G089000 [exp] 205 / 4e-62 AT3G09770 301 / 1e-100 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.005G225300 [exp] 53 / 3e-07 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G011300 [exp] 52 / 3e-07 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070750 [exp] 52 / 7e-07 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.001G168700 [exp] 51 / 9e-07 AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034030 [exp] 325 / 5e-108 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10004419 [exp] 323 / 1e-107 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10023182 [exp] 258 / 1e-83 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10015080 [exp] 259 / 1e-82 AT3G09770 364 / 9e-125 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10037412 [exp] 258 / 1e-82 AT3G09770 351 / 6e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10041300 [exp] 252 / 1e-80 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10035335 [exp] 50 / 2e-07 AT4G22250 114 / 4e-33 RING/U-box superfamily protein (.1) Lus10029993 [exp] 50 / 2e-07 AT4G03965 118 / 2e-34 RING/U-box superfamily protein (.1) Lus10003551 [exp] 49 / 1e-06 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009035 [exp] 50 / 2e-06 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.005G036400.1 pacid=42804478 polypeptide=Potri.005G036400.1.p locus=Potri.005G036400 ID=Potri.005G036400.1.v4.1 annot-version=v4.1 ATGGGTTCCGCTTCCAGCAGACACAGAAGAAACCACCGCCAAAACAACCACCTCCACCATCGTCAAAACCCACAACACCCTTCTCTACCTTCCTCCTCCT CCACCACCGCCACCACCCCAATTCACCAACCTCCCTCTTTCTCCGACACCAACAATACAAATAACCTCTACCCACAAAACAGTTCAATACCTTGTAGTAA TAATTCCTTAACAAGTACTATACCACCACCATCATCATCACCGTTACCGCCACCTCCACCTCCACGTCCACCGACACCACCTCTACAACAGCCACAAAGT TATTATTTTGCAGCGAATGCACCATACAGTACTCCTATGATTCCCACAAGTTCTGCTTACGGTTCTTATAGTTACCATCACCCTCCTCCTCCTCCTCCTC CTTTCAATAACAATGGATGGGGGTCATATCATTATCATCAAGCTGGTTTCATGGGACCACCACTGCAACCATCAACACAGGTGAGACATCATAATTCGGG ACTGGTGCAGCCGCCGCGTTATGTGGAGCATAATCCAGCGAAGACAGTCAAGAATTTTGTGAATGTGAATAAGTCTAGTATTAAAGTTGTTGCTGATGAG AATAATTTGGATTCTCACTTGGTTTCCTTCACTTTTGATGCTGTTGTTGATGGCAGCATCACCATATTTTATTTTGCAAAGGAAGGAGACAATTGTACAT TTGTACCAGTTTACCCTGAAATCTATACGCCAAGGAAAATCCCCTTTGAGAAAGGAGTGGGCCAAATATTCTCACAGCCATCAGGAACCGGCATTGACCT AGGCTTTTTTGAATTGGATCAGCTATCAAAGCCCTCGCCCGAGGAAGATATATTTCCGCTTGTTATCTTTGCTGAAGCATCCTCACCTTCTCTCTCTACA TCTACGAGTCAAGAGCCTGACAAGCCTTTGCCAACCATGTCTACTCATGCACAAATAACTGAAGCTGTCTTGGTGAAAAATAACGAAGGCCATTTTCAAG TAAAAGTAGCCAAACAAATCTTATGGATTAATGGGATTCGTTATGAGTTGCGAGAGATCTTTGGCATTGCCAATTCTGATGGTGCTGGTGTTGATGGGGA GACTGATTCCGGAAAAGAATGCATTATTTGCATGACTGAGCCAAAGGATACTGCCGTTTTACCTTGTCGACATATGTGCTTGTGCAGCGGATGCGCAAAG GAGTTGAGGTCTCGATCGGATAGGTGTCCTATATGTCGCCAACCCATACAGGAACTTATGGAGATCAAGGTTAATAATTCTCATCCTGAATAA
AA sequence Show only first row Show all	>Potri.005G036400.1 pacid=42804478 polypeptide=Potri.005G036400.1.p locus=Potri.005G036400 ID=Potri.005G036400.1.v4.1 annot-version=v4.1 MGSASSRHRRNHRQNNHLHHRQNPQHPSLPSSSSTTATTPIHQPPSFSDTNNTNNLYPQNSSIPCSNNSLTSTIPPPSSSPLPPPPPPRPPTPPLQQPQS YYFAANAPYSTPMIPTSSAYGSYSYHHPPPPPPPFNNNGWGSYHYHQAGFMGPPLQPSTQVRHHNSGLVQPPRYVEHNPAKTVKNFVNVNKSSIKVVADE NNLDSHLVSFTFDAVVDGSITIFYFAKEGDNCTFVPVYPEIYTPRKIPFEKGVGQIFSQPSGTGIDLGFFELDQLSKPSPEEDIFPLVIFAEASSPSLST STSQEPDKPLPTMSTHAQITEAVLVKNNEGHFQVKVAKQILWINGIRYELREIFGIANSDGAGVDGETDSGKECIICMTEPKDTAVLPCRHMCLCSGCAK ELRSRSDRCPICRQPIQELMEIKVNNSHPE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06140			RING/U-box superfamily protein...		Potri.005G036400 [exp]	0	1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.003G116500 [exp]	7.21	0.8709
AT2G48140		EDA4	embryo sac development arrest ...		Potri.002G050200 [exp]	10.53	0.8863
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.005G257200 [exp]	13.92	0.8837
					Potri.019G082600 [exp]	17.74	0.8819
AT1G78110			unknown protein		Potri.002G094700 [exp]	17.83	0.8068
AT1G73165		CLE1	CLAVATA3/ESR-RELATED 1 (.1)		Potri.011G096800 [exp]	20.61	0.8802
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.005G035800 [exp]	20.78	0.7550	HAP5.6
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.014G073100 [exp]	21.90	0.8378
					Potri.004G179866 [exp]	26.15	0.8713
AT2G48140		EDA4	embryo sac development arrest ...		Potri.005G212000 [exp]	26.45	0.8810

Compare expression of checked genes

Potri.005G036400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.