Plant FIBer expression Database

Potri.005G036700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G05210 424 / 3e-147 UVR7, ERCC1 UV REPAIR DEFICIENT 7, nucleotide repair protein, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004462
[exp]
444 / 3e-155 AT3G05210 465 / 2e-163 UV REPAIR DEFICIENT 7, nucleotide repair protein, putative (.1)
Lus10029947
[exp]
147 / 2e-43 AT3G05210 136 / 1e-39 UV REPAIR DEFICIENT 7, nucleotide repair protein, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF03834 Rad10 Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
Representative CDS sequence
>Potri.005G036700.1 pacid=42803956 polypeptide=Potri.005G036700.1.p locus=Potri.005G036700 ID=Potri.005G036700.1.v4.1 annot-version=v4.1
ATGGAGAGAGAAGAAAGAGGAGAAGAGCAAAACACAAATTCATCAAACCAAAACAAAAAAGTACTAATACAAATACCATCCTACCAAGAAGTAATTGAAA
GCTCACAAGTTAAACCTACACAAACACAAGAATCATCATTATTTAAGCCATCACAAACTTTCTCTCAAGCTTTCTCCTTTATTAAAAACTCTGAATTCTA
CTCTCCTCCTCCTCCTCCACCTTCAAAATCTGAACATGGGCCTAGTAGTTCTGCAACCACGAGTGAAAAGGTTTCACCATCTCCATTGGCATCAGCTCCT
GCTGCTTCTTTTGGTGGTGGAGTGGCTTCATCTTCAGTGCAAAATAATCAGAGTCGCAATGCTATTCTTGTTAGTCATAGACAGAAGGGAAACCCCTTGC
TTAAACATATTAGGAATGTAAAGTGGGCTTTTGCGGATGTTGTTTGTGACTATTTGCTTGGACAGAGCTCATGTGCTCTTTATCTAAGTCTTCGATATCA
TTTACTCCATCCAGACTACCTATATTACCGTATAAGAGAGCTACAAAAGAACTGCAAGCTTCGTGTTGTTCTATGCCATGTTGATGTGGAGGATGTAGTT
AAGCCTTTACTTGAAGTCACAAAAACAGCTCTGCTTCATGATTGTACACTATTATGTGCTTGGAGCTTGGAGGAATGTGGTCGCTACTTGGAGACTATAA
AAATGTATGAAAACAAGCCTGCAGACCTTATTCAGGGCCAAATGGATACTGACTATTCATCTCGGCTACACCATGCTCTCACAACTGTTCGACGTGTTAA
CAAGACAGATGTGGTAACACTTGGATCTACATTTGGGTCTCTTTCTAATATCATGGATGCATCCATGGAAGATCTAGCTCGTTGCCCTGGAATAGGAGAG
CGCAAGGTGAAACGCTTGTATGATACTTTTCATGAACCATTCAAGCGTGTAGTTTCAAGCCACCCTGTTGTTCCACAAACCCCAGTCCAGAAAGACACTG
AACCTTCCTCAGTCGATGAGGTTGCAGAAATGGAGATGGAGGAAGCAAATGCAAACAAACGTAGGAAGAAAGAACCAGAATTAACTGTCAAGTCAGCCCT
ATCTTCTGCATTTGCAAAGTGTGCTACTAATAAATTGGGTAATAAGAAATTCCAAAGAGAAAAGGTTGGAGAAACAAGTACTGCCATTGACTCGGAAGCT
GAAACTAGGAAAACCTCCGGTTAA
AA sequence
>Potri.005G036700.1 pacid=42803956 polypeptide=Potri.005G036700.1.p locus=Potri.005G036700 ID=Potri.005G036700.1.v4.1 annot-version=v4.1
MEREERGEEQNTNSSNQNKKVLIQIPSYQEVIESSQVKPTQTQESSLFKPSQTFSQAFSFIKNSEFYSPPPPPPSKSEHGPSSSATTSEKVSPSPLASAP
AASFGGGVASSSVQNNQSRNAILVSHRQKGNPLLKHIRNVKWAFADVVCDYLLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNCKLRVVLCHVDVEDVV
KPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKMYENKPADLIQGQMDTDYSSRLHHALTTVRRVNKTDVVTLGSTFGSLSNIMDASMEDLARCPGIGE
RKVKRLYDTFHEPFKRVVSSHPVVPQTPVQKDTEPSSVDEVAEMEMEEANANKRRKKEPELTVKSALSSAFAKCATNKLGNKKFQREKVGETSTAIDSEA
ETRKTSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G05210 UVR7, ERCC1 UV REPAIR DEFICIENT 7, nucleot... Potri.005G036700
[exp]
0 1
AT3G59470 FAR1_related Far-red impaired responsive (F... Potri.017G029100
[exp]
2.00 0.6699
AT3G59470 FAR1_related Far-red impaired responsive (F... Potri.007G129500
[exp]
4.00 0.6545
AT3G16890 PPR40 pentatricopeptide (PPR) domain... Potri.010G141201
[exp]
9.27 0.6754
AT1G25380 ATNDT2 NAD+ transporter 2, ARABIDOPSI... Potri.008G123700
[exp]
27.42 0.6141
Potri.004G080501
[exp]
27.87 0.6626
AT2G02570 nucleic acid binding;RNA bindi... Potri.004G229200
[exp]
34.08 0.6441
AT2G30000 PHF5-like protein (.1) Potri.001G277800
[exp]
34.64 0.6360
AT2G33980 ATNUDT22 nudix hydrolase homolog 22 (.1... Potri.004G053300
[exp]
43.26 0.5399
AT3G26980 MUB4 membrane-anchored ubiquitin-fo... Potri.017G068100
[exp]
50.73 0.5739
AT2G30580 BMI1A, DRIP2 DREB2A-interacting protein 2 (... Potri.005G054400
[exp]
50.91 0.5929

Potri.005G036700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.