Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08920 483 / 2e-168 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT1G08930 481 / 4e-167 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G54730 473 / 2e-164 Major facilitator superfamily protein (.1.2.3) AT5G27350 470 / 3e-163 SFP1 Major facilitator superfamily protein (.1) AT5G27360 467 / 5e-162 SFP2 Major facilitator superfamily protein (.1) AT3G05165 466 / 1e-161 Major facilitator superfamily protein (.1.2.3.4.5) AT1G08900 465 / 2e-161 Major facilitator superfamily protein (.1.2.3) AT3G05160 454 / 4e-157 Major facilitator superfamily protein (.1.2) AT3G20460 450 / 5e-155 Major facilitator superfamily protein (.1) AT1G08890 442 / 2e-152 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027700 [exp] 838 / 0 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 614 / 0 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027800 [exp] 577 / 0 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 534 / 0 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G040000 [exp] 466 / 2e-161 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.010G026500 [exp] 456 / 1e-157 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 444 / 4e-153 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 443 / 1e-152 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.007G024300 [exp] 354 / 1e-117 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033812 [exp] 552 / 0 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029960 [exp] 525 / 0 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 499 / 2e-174 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 494 / 5e-172 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10033814 [exp] 480 / 6e-167 AT1G08920 466 / 8e-162 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Lus10035356 [exp] 480 / 1e-166 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 466 / 2e-158 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10012780 [exp] 449 / 2e-154 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029964 [exp] 448 / 1e-153 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10029966 [exp] 438 / 8e-150 AT1G54730 525 / 0.0 Major facilitator superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.005G037000.1 pacid=42803310 polypeptide=Potri.005G037000.1.p locus=Potri.005G037000 ID=Potri.005G037000.1.v4.1 annot-version=v4.1 ATGGAGGGAGACGGCATAGAAGAAGGGCTGGAATCAGCAACAAGCCCTCTACTTCTCGGAGATAAGAGCACCGGCAACACAACAACCAGCAACCAGCACT CCATCACTCCCGTTCTTGTCTTCAGCACCTTTGTTGCTCTCTGTGGTTCCTTCAGCTATGGATGTTCTGTGGGTTACTCGTCGCCTGCTGAGTCTGGAAT CATGAAAGATTTAGGCCTCTCTGTTGCAGCATACTCAGTTTTTGGCTCGATAGTGACAATAGGAGGGATGGTAGGTGCAATTTTAAGTGGGAAGATGGCA GATCTCATCGGTCGAAGAGGAACGATGTGGACATGCCAGATAATTTGCATGGCAGGCTGGCTTGCAATAGCATTTGCTAAGAAAGCTTGGTGTCTGGACA TTGGAAGATTCTTAGTCGGAGTTGCAATTGGGATTCTTACTTATGTGGTGCCTGTATATATTTCAGAAATTACTCCTAAGAATCTCAGGGGACGATTTAC CTCAGCCAATCAGTTGTTAGTATGTTGTGGCTTTGCAGTAACGTATTTTGTTGGAAGTATTGCAAGCTGGCGTGCCTTGTCTCTTATAGCTACTATTCCA AGCATAGTGCAAATTGTATGTTTATTTTTCGTCCCAGAGTCTCCAAGATGGCTGGCAAAACTCGGCCGTGAAAAGGAGTTTGAAGCTTCTTTGCAACGTC TTAGGGGAACAAACTCAGATATTTCTGAAGAAGCAGTTGATATCAGAGATGCTATAGAAATTTTGAAACAGACCTCAGCTGAAACTAGAACCTTAGAGTT GTTCCAGAGGAGATATGCTTATGCAGTTATTGTTGGAGTAGGGCTGATATTACTACAAACATTTGGAGGAAATAGTGCAGTGTCATATTATCTTGGCACC ATATTTGCTAAAGCTAATGTTTCAACCTCCTCTGGACCTATAATTTTTGCTCTTTTACAGATTCCAACATCTGTTGCAACTGTACTCTTAATGGATTTAT TTGGAAGACGGACACTTCTTATGGTTTCAGCTACCACATCATGCTTATGCTTGTTCCTTGTAGGATTATCGTTTTGCTTCCAGGAATCCCACAACCTGAA AGAGCTCACCCCAATAATGACTTTGGTTGGCATATTGGGTTTTGGCTGCGGTTTTGCCATAGGCATGTCAGGAATACCTTGGGTTATAATGGCAGAGATA TATCCTGTAAATGTTAAGGCATCAGCAGGAAGCCTAGTGGTTTTAACCAGCTGGGCTAGTTCTTGGGTTGTGACATACACATTTAATTTTATGCTGGAGT GGAGTTCAGCTGGGACATTCTTCATCTTCAGTGGAATGTGTGCTTTAACTATTTTATTCGTATGGAAGTTGGTGCCAGAGACGAAGGGAAGAACATTAGA AGAAATACAATCAAGATTAATCACTCAGATCCCTGGACAAAACTCGGTGATAGCGAAAACATAA
AA sequence Show only first row Show all	>Potri.005G037000.1 pacid=42803310 polypeptide=Potri.005G037000.1.p locus=Potri.005G037000 ID=Potri.005G037000.1.v4.1 annot-version=v4.1 MEGDGIEEGLESATSPLLLGDKSTGNTTTSNQHSITPVLVFSTFVALCGSFSYGCSVGYSSPAESGIMKDLGLSVAAYSVFGSIVTIGGMVGAILSGKMA DLIGRRGTMWTCQIICMAGWLAIAFAKKAWCLDIGRFLVGVAIGILTYVVPVYISEITPKNLRGRFTSANQLLVCCGFAVTYFVGSIASWRALSLIATIP SIVQIVCLFFVPESPRWLAKLGREKEFEASLQRLRGTNSDISEEAVDIRDAIEILKQTSAETRTLELFQRRYAYAVIVGVGLILLQTFGGNSAVSYYLGT IFAKANVSTSSGPIIFALLQIPTSVATVLLMDLFGRRTLLMVSATTSCLCLFLVGLSFCFQESHNLKELTPIMTLVGILGFGCGFAIGMSGIPWVIMAEI YPVNVKASAGSLVVLTSWASSWVVTYTFNFMLEWSSAGTFFIFSGMCALTILFVWKLVPETKGRTLEEIQSRLITQIPGQNSVIAKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08920		ESL1	ERD (early response to dehydra...		Potri.005G037000 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.001G066500 [exp]	5.09	0.8409
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	10.77	0.8302
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	11.61	0.8207
AT5G27410			D-aminoacid aminotransferase-l...		Potri.005G039100 [exp]	12.40	0.7926	Pt-AAT.3
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	13.78	0.7978
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.002G068600 [exp]	16.73	0.7801	GT2.3
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048700 [exp]	18.65	0.7952
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Potri.004G163800 [exp]	22.44	0.7545
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.009G096700 [exp]	24.33	0.7909
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	27.45	0.7835

Compare expression of checked genes

Potri.005G037000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.