Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06900 383 / 6e-128 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT3G20950 341 / 1e-111 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1) AT5G07990 330 / 3e-107 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G42250 328 / 1e-106 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT2G14100 327 / 3e-106 CYP705A13 "cytochrome P450, family 705, subfamily A, polypeptide 13", cytochrome P450, family 705, subfamily A, polypeptide 13 (.1) AT4G15350 325 / 1e-105 CYP705A2 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) AT3G20130 324 / 4e-105 GPS1, CYP705A22 gravity persistence signal 1, "cytochrome P450, family 705, subfamily A, polypeptide 22", cytochrome P450, family 705, subfamily A, polypeptide 22 (.1.2) AT3G20940 324 / 5e-105 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT3G32047 319 / 2e-103 Cytochrome P450 superfamily protein (.1) AT2G27000 319 / 3e-103 CYP705A8 "cytochrome P450, family 705, subfamily A, polypeptide 8", cytochrome P450, family 705, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037100 [exp] 1004 / 0 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.013G027000 [exp] 705 / 0 AT5G06900 357 / 3e-118 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G049800 [exp] 499 / 2e-173 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058200 [exp] 481 / 2e-166 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G057900 [exp] 355 / 5e-117 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G052600 [exp] 348 / 2e-114 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.009G065000 [exp] 343 / 2e-112 AT5G47990 425 / 1e-144 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G066300 [exp] 339 / 4e-111 AT3G20140 419 / 2e-142 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) Potri.006G190800 [exp] 335 / 2e-109 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005878 [exp] 580 / 0 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 565 / 0 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10035502 [exp] 467 / 9e-161 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10027798 [exp] 340 / 2e-113 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10023827 [exp] 335 / 3e-109 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10024816 [exp] 312 / 3e-100 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10019457 [exp] 309 / 2e-99 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10018717 [exp] 307 / 2e-98 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10021158 [exp] 306 / 4e-98 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017961 [exp] 301 / 5e-96 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.005G037201.1 pacid=42803404 polypeptide=Potri.005G037201.1.p locus=Potri.005G037201 ID=Potri.005G037201.1.v4.1 annot-version=v4.1 ATGATGCTTGAGCTCATAGGTTTTGCCATTCTGTTGCTTTCAATTTTCTTGATCTTCACAAACAGACCAAGGCATGCCTGTTTTCCTCCAGGTCCCCGGT CTTTACCAATCATCGGTCACCTCCATCTCCTTGGACCCCTAATTCACCATTCCTTTCGTGATATATCTTCTCGTTATGGTCCCTTAATTTTTCTCCGTCT TGGTTCTGCCCCATGTGTCGTGGCTTCCTCCCCCGAACTTGCTAAAGAATTCCTAAAGATACACGACGTCATCTTCTCTTCTCGCGAAATGGATTCTCGA GCCATTAAGCTCCTTACCTATAACTCTTCCTTTGCCTTTGCACCCTATGGACCTCTCTGGAAATTCCTCAAGAGGTTGAGCACATTTGAGCTCTTAAGCA GCCGGGCACTTAACCATTTTCAGCCTATAAGAAAAATTGAGTTGCAACAGTTTCTTCAAAATCTTCTTACCAAGTCTAAAATCAGTGAGAGTGTTAATGT CACTCAAGAGTTGCTAAACTTATCAAACAACATCATTTCTCAAATGATGTTAAGTATCAGGTGTTCAGGGAGCGATAGCCAGGGTGAAGATGCCAAAACT TTGGCACGAGAGGTAACACAGATATTTGGAGAGTTTAACGTCTCGGATTTTATATGGCTTTGCAGGAACTTTGACTTTCAGGGTTCTAGGAAGAAATCCG AGGATGTACATACAAGGTTTGATGCATTGCTGGACAATATCATCACAAACCGTGAGCTTGAGAGAAAGCAAAGTGGAGGAAAAGTTCAGGCCAGAGATCT TTTGGACATGATGCTTGATACTTTGGAAGCTCAAAACTCAGAGATAGAGTTTACTAGAGATCACATTAAAGCCTTGGTTTTGGATTTCTTAACAGCAGGC ACGGATACAACAGCAGCTTCAACTGAATGGGCACTAGCTGAGCTCATAAACCATCCAAAGATCCTTGAGAAAGCAAGGCAGGAGATTGATGCTGTTGTTG GAAACAAGAGGCTGGTAGAAGAATCAGACTTTCCAAATCTTCCTTATCTCCAGGCCATCTTCAAGGAAACTTTCAGGCTTCATCCACCGATCCCAATGAT CTCAAGAAAATCAACCCAGGAATGCAAGATCAATGGCTATACAATCCCTGCAAACTCATTGTTATTTGTGAACATGTGGTCTATCGGAAGAGATTCAAAA TACTGGACAAACCCGTCGGAATTTGAACCTGAACGGTTTCTAAAACCCAACGGAGATATGTGCAATGAATCTGCTTCGGTGGACTTTAAAGGCCAACATT ATCAGCTGTTGCCATTTGGTACTGGCAGAAGAAGCTGCCCTGGCCTTGCTTTGGCCATGCAGGAATTGTCTACAACTCTCCCGGCTATGATTCAGTGCTT TGAATGGAAAGTGGCTGGCTCACAGGGGGAGAAAATCAATGGCAATGTTGCTGTTGATATGACAGAAAGGCCTGGATTAACGGTTCCAAGGGCTCACGAT CTTGTGTGCATACCGGTGCCACGACAACCTGACATCATTCAAGCGTTTATAAAAAGTGGTCTCCGTTGA
AA sequence Show only first row Show all	>Potri.005G037201.1 pacid=42803404 polypeptide=Potri.005G037201.1.p locus=Potri.005G037201 ID=Potri.005G037201.1.v4.1 annot-version=v4.1 MMLELIGFAILLLSIFLIFTNRPRHACFPPGPRSLPIIGHLHLLGPLIHHSFRDISSRYGPLIFLRLGSAPCVVASSPELAKEFLKIHDVIFSSREMDSR AIKLLTYNSSFAFAPYGPLWKFLKRLSTFELLSSRALNHFQPIRKIELQQFLQNLLTKSKISESVNVTQELLNLSNNIISQMMLSIRCSGSDSQGEDAKT LAREVTQIFGEFNVSDFIWLCRNFDFQGSRKKSEDVHTRFDALLDNIITNRELERKQSGGKVQARDLLDMMLDTLEAQNSEIEFTRDHIKALVLDFLTAG TDTTAASTEWALAELINHPKILEKARQEIDAVVGNKRLVEESDFPNLPYLQAIFKETFRLHPPIPMISRKSTQECKINGYTIPANSLLFVNMWSIGRDSK YWTNPSEFEPERFLKPNGDMCNESASVDFKGQHYQLLPFGTGRRSCPGLALAMQELSTTLPAMIQCFEWKVAGSQGEKINGNVAVDMTERPGLTVPRAHD LVCIPVPRQPDIIQAFIKSGLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.005G037201 [exp]	0	1
					Potri.003G163151 [exp]	1.00	0.9259
					Potri.010G239800 [exp]	1.41	0.9203
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.001G400500 [exp]	15.49	0.7651	PSCLRR52.54
					Potri.009G048602 [exp]	24.85	0.7987
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Potri.001G338800 [exp]	28.24	0.8582
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.001G312650 [exp]	29.52	0.7906
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	59.13	0.8537
AT5G15110			Pectate lyase family protein (...		Potri.017G078400 [exp]	92.77	0.8537
AT2G24370			Protein kinase protein with ad...		Potri.018G002400 [exp]	94.21	0.8537
					Potri.001G276804 [exp]	103.73	0.8537

Compare expression of checked genes

Potri.005G037201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.