Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 622 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 565 / 0 EFR EF-TU receptor (.1) AT3G47110 562 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 551 / 1e-179 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 544 / 6e-177 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 418 / 2e-129 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 407 / 6e-124 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 399 / 2e-120 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 391 / 3e-119 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 396 / 4e-119 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G060100 [exp] 1530 / 0 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 676 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 671 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 668 / 0 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 666 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 662 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 658 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 656 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 655 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009394 [exp] 901 / 0 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019525 [exp] 856 / 0 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043368 [exp] 843 / 0 AT3G47570 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 642 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 640 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 640 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 638 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 637 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 636 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 635 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G037400.1 pacid=42804865 polypeptide=Potri.005G037400.1.p locus=Potri.005G037400 ID=Potri.005G037400.1.v4.1 annot-version=v4.1 ATGTACGATAAGCTCATTGTTCCTTGGCTCGGTTACCCGATATTTTTCAGATTGTTTTCTTCCTTTTCTAGTGCCCTCAGAAACCAGAAAGTTCTGGCTT TAGCATTGCGTTTTCGCTGTGTTGCTGTTTTAGTTTTTCTATTATCATCCCCAAGTGCACTTCCAGTGGTGAAGGTGAAGGCAGCTGCTTTGGACCTTTT CACTGACAAGGAAGCACTGCTTTCGCTTAAATCTCAGGTAACCACTGATCCTTCAAATACTCTTTCCTCATGGAACAACAGCTCCAGCCCCTGTAACTGG ACTCGTGTTAGCTGCAACCAGGTGAATCAAAGAGTCATTGGCCTTGATTTGTCTGGCCTTAGATTAACAGGTTCCATTAGCCCAAATATTGGAAACCTAT CCCTCCTTCGCTCACTCCATCTACAAGGGAACCAATTTACAGGACTTATTCCTGATCAAATTGGTGCTCTTTCCCGTTTGAGCGTCCTGAATATTAGCTT TAACAGCATCAATGGTCCAATACCTTTGAACACAACCATGTGCTTAAATCTCCAGATCCTGGACTTGATGCAGAATGAGATCTCAGGAGCAATTCCTGAG GAACTCAGCAGCCTAAAAAACCTTGAAATCCTTAATCTGGGTGGAAACAAGCTCTGGGGTACGATCCCACCATCTTTCGCAAACATTTCCTCTCTTCTCA CCCTAAATCTAGCCACCAATAATCTTGGTGGAATGATCCCTGACGATTTTGGTCGTTTTAAGAATCTAAAACATCTAGACCTTAGTATCAATAATCTCAC CGGCAATGTTCCTCTATCCCTGTACAACATTTCTTCTTTGGTTTTCCTCGCTGTTGCTTCAAACCAACTGCGAGGTGAAATCCCAGTTGATGTTGGAGAT AGACTCCCAAATCTTTTGAACTTCAATTTTTGCATTAACAAATTTACTGGTTCAATTCCATGGTCTTTGCATAATCTTACAAACATACAGAGCATCCGTA TGGCACACAATCTTCTGAGTGGATATGTGCCATCAGGACTTAGAAATCTTCCTGAATTGCAAATGTATAACATTGGCTACAATCAGATAAAAAGTTCTGG TGATGAGGGTCTCAATTTTCTCACTTCTTTCATAAACAGTAGCTATCTTAACTTTCTTGCCGTTGATGGCAATCTTCTGGAGGGTCTCATTCCGGAATCC ATTGGAAATCTCTCGAGTTCTCTTAGAAGTTTATACTTGGGAGGGAATAGAATATATGGAAGGATACCTGCCTCAATCAGACATCTTAGAAGCTTGGCGT TGCTAAATATAAGCTATAATTATGTTTCTGGTGAAATTCCACCAGAAATCGGCGAGCTTACAAATCTGCAAGAGTTGCATTTGGCTGCAAATAAGATATC GGGCAGAATTCCAAACTCCCTTGGAAAGCTCCAAAAACTGAATGAAATTGATCTATCTAGTAACGACTTGGTAGGAAGTCTGCCCACAACTTTTGTTAAT TTCCAGCAATTGGTGTCCATGGATCTATCCAGCAACAGGCTCAACGGAAGCATACCAAAAGCAATTTTTAGTCTCTCCAGTTTGAGTGCAACTCTGAACC TGTCCAGTAACCAGCTAACAGGTTCTTTTCCTCAAGAGATCAAGGGGCTCGAAAATGTTGCCGCTGTTGATTTTTCTCACAATCATTTGTCTGGAAGCAT CCCAGATACAATTGGAAGCTGGAAGAGTTTGGAGAAGTTATTCATGGACAATAATATGTTCTCTGGAGCCATTCCAGCTACTCTAGGCGACGTGAAGGGT TTGGAGATCCTTGACCTCTCTTCGAACCAAATATCAGGCATAATACCCAATAATCTTGGAAACTTGCAGGCCCTTTACTTGTTGAACCTCTCATTCAACG ACCTTGAAGGACTTCTTCCTAAGGAAGGAGCCTTCAGAAATCTCTCTAGAATTCACGTGGAAGGGAATTCGAAGCTCTGCTTGGATTTAACTTGTTGGAA CAATCAACATCGGAAAAGAACATCCACTGCAATTTATATTGTCATTGCCAGCATAGCCACAGTTGCAGTATGCTCAGTGATAGCAGTTTTGCTGTGTGTA AGGAAAAGAAAAGGGAAAATTATGCCACGGGCAGATTCAATTAAGCTTCAGCATCCCACAATCACTTACAGAGAACTTCGTGAAGCAACTGGGAGTTTTG ACACTGGAAATCTGATAGGGAAGGGCAGTTTTGGGTCAGTCTACAAAGGTGAACTTGGAGATGGGACTGTTGTTGCAGTTAAGGTGCTTGACATCGAGAA GTACGGATCCTGGAAGAGTTTTTTGGCTGAATGTGAGGCTTTGAAGAACGTAAGGCATCGGAATCTTATTAAACTCGTCACCTCATGCTCAAGTATAGAT GTTAAGGGTTTCCAATTTGTGGCTTTGGTTTATGATTACATGCATAATGGGAGCTTGGAAGAATGGATTAAGGGAAGCAAAAGGCGATCAGATGGAAGCT TGTTGAATATTTTGGAGAGGTTAAATGTGGCAATCGATGTTGCTTGCGCTGTGGATTACCTGCACCATGACTGTGAAATTCCAGTAGTGCACTGTGATTT GAAACCAAGTAATGTGCTTTTTGACAAAGACATGACTGCAAAGGTGGGAGACTTCGGTTTGGCTAAATTGCTGGCAGAGAGAGGAGCTGATCAACAGCCA ATAACTTGCACAGGTGGCCTCAGGGGCTCTATAGGATACATTCCTCCAGAATATGGTTTAGGATTGCGGCCATCAACTTCGGGAGATGTATACAGCTATG GAGTTATGCTGCTAGAGCTGTTCACAGGGAAGAGCCCAACACACGAAATCTTTTCTGGTGGTTTTAGCATAATCAAGTGGGTGGAATCAGTTTTTCCTGC CAGCATAGAACAAGTAGTGGACCCTGAGCTACTCTTATCAATTCAAGATTTTCAGCATGACGCTCAATCCATAAGCCCTGAAAAACAGCATGAATGCTTG ATTACTATCCTTGGTGTTGGGCTATCCTGCACGGTTGATTCTCCTGATCGGAGAACTAACATGAGGGACTCTCTTCTCAAACTGAAAACGGCTAGAGACA CTCTTCTCAAACCACCGCTTGATCACAAACCAGATCTTGACTTGGAAGCTGGAATTGGCAATAGCAGCATGAAGAGTTTCTAG
AA sequence Show only first row Show all	>Potri.005G037400.1 pacid=42804865 polypeptide=Potri.005G037400.1.p locus=Potri.005G037400 ID=Potri.005G037400.1.v4.1 annot-version=v4.1 MYDKLIVPWLGYPIFFRLFSSFSSALRNQKVLALALRFRCVAVLVFLLSSPSALPVVKVKAAALDLFTDKEALLSLKSQVTTDPSNTLSSWNNSSSPCNW TRVSCNQVNQRVIGLDLSGLRLTGSISPNIGNLSLLRSLHLQGNQFTGLIPDQIGALSRLSVLNISFNSINGPIPLNTTMCLNLQILDLMQNEISGAIPE ELSSLKNLEILNLGGNKLWGTIPPSFANISSLLTLNLATNNLGGMIPDDFGRFKNLKHLDLSINNLTGNVPLSLYNISSLVFLAVASNQLRGEIPVDVGD RLPNLLNFNFCINKFTGSIPWSLHNLTNIQSIRMAHNLLSGYVPSGLRNLPELQMYNIGYNQIKSSGDEGLNFLTSFINSSYLNFLAVDGNLLEGLIPES IGNLSSSLRSLYLGGNRIYGRIPASIRHLRSLALLNISYNYVSGEIPPEIGELTNLQELHLAANKISGRIPNSLGKLQKLNEIDLSSNDLVGSLPTTFVN FQQLVSMDLSSNRLNGSIPKAIFSLSSLSATLNLSSNQLTGSFPQEIKGLENVAAVDFSHNHLSGSIPDTIGSWKSLEKLFMDNNMFSGAIPATLGDVKG LEILDLSSNQISGIIPNNLGNLQALYLLNLSFNDLEGLLPKEGAFRNLSRIHVEGNSKLCLDLTCWNNQHRKRTSTAIYIVIASIATVAVCSVIAVLLCV RKRKGKIMPRADSIKLQHPTITYRELREATGSFDTGNLIGKGSFGSVYKGELGDGTVVAVKVLDIEKYGSWKSFLAECEALKNVRHRNLIKLVTSCSSID VKGFQFVALVYDYMHNGSLEEWIKGSKRRSDGSLLNILERLNVAIDVACAVDYLHHDCEIPVVHCDLKPSNVLFDKDMTAKVGDFGLAKLLAERGADQQP ITCTGGLRGSIGYIPPEYGLGLRPSTSGDVYSYGVMLLELFTGKSPTHEIFSGGFSIIKWVESVFPASIEQVVDPELLLSIQDFQHDAQSISPEKQHECL ITILGVGLSCTVDSPDRRTNMRDSLLKLKTARDTLLKPPLDHKPDLDLEAGIGNSSMKSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G037400 [exp]	0	1
AT1G14780			MAC/Perforin domain-containing...		Potri.008G136401 [exp]	5.47	0.9184
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.001G190100 [exp]	16.06	0.8792
AT3G52220			unknown protein		Potri.010G240300 [exp]	16.27	0.7573
					Potri.005G059900 [exp]	17.74	0.8787
AT3G25950			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.008G178800 [exp]	17.88	0.8821
AT4G03410			Peroxisomal membrane 22 kDa (M...		Potri.019G103200 [exp]	17.88	0.8913
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Potri.004G116100 [exp]	18.73	0.8731
AT4G11570			Haloacid dehalogenase-like hyd...		Potri.001G104366 [exp]	24.65	0.8756
AT5G24660		LSU2	response to low sulfur 2 (.1)		Potri.015G000500 [exp]	29.56	0.8603
AT5G01540		LECRKA4.1	lectin receptor kinase a4.1 (....		Potri.016G123501 [exp]	32.12	0.8709

Compare expression of checked genes

Potri.005G037400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.