Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54740 104 / 8e-26 Protein of unknown function (DUF3049) (.1) AT5G22390 57 / 2e-09 Protein of unknown function (DUF3049) (.1) AT1G22110 46 / 2e-05 structural constituent of ribosome (.1) AT4G02810 42 / 0.0003 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT3G63020 41 / 0.0004 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027100 [exp] 289 / 3e-97 AT1G54740 103 / 1e-25 Protein of unknown function (DUF3049) (.1) Potri.009G162800 [exp] 66 / 5e-12 AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1) Potri.004G201500 [exp] 60 / 4e-10 AT5G22390 72 / 4e-15 Protein of unknown function (DUF3049) (.1) Potri.005G209100 [exp] 58 / 2e-09 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 52 / 1e-07 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.010G239800 [exp] 51 / 2e-07 ND / Potri.008G149600 [exp] 48 / 4e-06 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 47 / 7e-06 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.002G092000 [exp] 46 / 1e-05 AT1G22110 130 / 2e-36 structural constituent of ribosome (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035353 [exp] 123 / 1e-32 AT1G54740 93 / 1e-21 Protein of unknown function (DUF3049) (.1) Lus10029969 [exp] 87 / 2e-20 AT1G54740 74 / 4e-16 Protein of unknown function (DUF3049) (.1) Lus10004863 [exp] 58 / 1e-09 AT5G22390 97 / 9e-25 Protein of unknown function (DUF3049) (.1) Lus10020626 [exp] 56 / 1e-08 AT5G22390 96 / 4e-24 Protein of unknown function (DUF3049) (.1) Lus10042576 [exp] 51 / 3e-07 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 43 / 0.0001 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 41 / 0.001 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [poplar] [flax] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Potri.005G037600.1 pacid=42804385 polypeptide=Potri.005G037600.1.p locus=Potri.005G037600 ID=Potri.005G037600.1.v4.1 annot-version=v4.1 ATGATGAGCTTTTGCAAGAAAAGTGTTCACTCGTTTTTAGATCTTACAAATCATCCCAATATTAGTGTTAGTAGTATTGGTGCTGCAGAAAAGCCTTCTT GCAAATGTCAAGGTGTTTGTAGTTCTCCCTCTGGATCAGGACTAGGGTTAATAACTACAACAACATGTGAAAGTGTCCATAAAACACCAAACATTCTTGA ATCAACAACTATCAAATCCTCTACACCTTTAACCACCCCACCTTCCTCACCACCACCACCACCACCACCATCTATAGCCTCTATCTTTAAAAAGGGACCT AGCGGGATTGGATTCCTTGATGATATTGGTGGTGGTGTTAATGGTTTGATGTCTTGTACTGAGAGTCTTGGGTTTGAGAGCTCTGATGAAAGAAGGTTTG ATGATGATAACGAGTTATGTTCAAGGGAAATACCAACAATAAACAAAGTTAAATGGAGAGAATTTGGCGAGAAAAAGGAAGCCAAGAAGTTTCCACCACC TCTTTCTTCTTTAAACCACAATGGTCAACCTAGTTTTTTCCTCAAGCCAGTGAGAAAAGATGGTAGGCTTGAATTGACAGAGGTTAGGATTGATAGGCAC GAGATTTTACGTGCCTCCAGACAAGATGGAAGGTTGCGGTTACATCTTGTTGAAGATGAAGAATTCCCAGTTGTTGAAGAAGAGTACGAGCCAGAACAAG AACAAGAAGAATATTTGGAGGAAGAGAAAGAAGGAGAATTAGAGGAGGAGGAGATGGTGGTTAAGGAAAACAATGAAGAAGAGAGTGCGGGGGAATTGGG ATTTCGAGTGAATAAAGAAGGGTTAAGAATAAGGTGTCATGAGCTGGTGGTTGATCACCACAATGATTATCACCACCACCACCACCGTAGCAACCTTTGG AGCCAACAATATTGTGTGCCAACAAGGTGA
AA sequence Show only first row Show all	>Potri.005G037600.1 pacid=42804385 polypeptide=Potri.005G037600.1.p locus=Potri.005G037600 ID=Potri.005G037600.1.v4.1 annot-version=v4.1 MMSFCKKSVHSFLDLTNHPNISVSSIGAAEKPSCKCQGVCSSPSGSGLGLITTTTCESVHKTPNILESTTIKSSTPLTTPPSSPPPPPPPSIASIFKKGP SGIGFLDDIGGGVNGLMSCTESLGFESSDERRFDDDNELCSREIPTINKVKWREFGEKKEAKKFPPPLSSLNHNGQPSFFLKPVRKDGRLELTEVRIDRH EILRASRQDGRLRLHLVEDEEFPVVEEEYEPEQEQEEYLEEEKEGELEEEEMVVKENNEEESAGELGFRVNKEGLRIRCHELVVDHHNDYHHHHHRSNLW SQQYCVPTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54740			Protein of unknown function (D...		Potri.005G037600 [exp]	0	1
AT2G16980			Major facilitator superfamily ...		Potri.004G178600 [exp]	1.00	0.9776
					Potri.001G076500 [exp]	5.83	0.9353
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	6.32	0.9518	Pt-CHRC.3
AT1G66920			Protein kinase superfamily pro...		Potri.007G125900 [exp]	6.70	0.9409
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.011G075800 [exp]	6.92	0.9501	AG1.1
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G099032 [exp]	8.24	0.9494
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.006G267300 [exp]	10.95	0.9391
AT5G38260			Protein kinase superfamily pro...		Potri.007G125800 [exp]	11.22	0.9424
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.014G107200 [exp]	11.83	0.9372
AT1G07040			unknown protein		Potri.008G194800 [exp]	12.48	0.9376

Compare expression of checked genes

Potri.005G037600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.