Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05170 442 / 1e-157 Phosphoglycerate mutase family protein (.1) AT1G08940 384 / 3e-135 Phosphoglycerate mutase family protein (.1) AT4G38370 42 / 0.0003 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131200 [exp] 298 / 2e-100 AT3G05170 283 / 1e-94 Phosphoglycerate mutase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015164 [exp] 435 / 5e-155 AT3G05170 421 / 2e-149 Phosphoglycerate mutase family protein (.1) Lus10031518 [exp] 432 / 4e-154 AT3G05170 423 / 3e-150 Phosphoglycerate mutase family protein (.1) Lus10029974 [exp] 411 / 1e-145 AT3G05170 410 / 4e-145 Phosphoglycerate mutase family protein (.1) Lus10035350 [exp] 314 / 1e-107 AT3G05170 317 / 1e-108 Phosphoglycerate mutase family protein (.1) Lus10032291 [exp] 261 / 3e-87 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1) Lus10024659 [exp] 257 / 9e-86 AT3G05170 241 / 2e-79 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00300 [poplar] [flax] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Potri.005G037900.1 pacid=42802406 polypeptide=Potri.005G037900.1.p locus=Potri.005G037900 ID=Potri.005G037900.1.v4.1 annot-version=v4.1 ATGACAGAACCAAATCAAGAAGCCACGCACCACCACCACCACCACCACCACCACCACCTCCCAAAAAGAATAATCCTTGTCCGCCATGGAGAATCACAAG GCAACCTAGACACAGCAGCTTACACTACAACGCCTGACAACAAAATCCAATTAACTCCTTCTGGTCTAGCACAAGCTCGGCAAGCTGGGAATCACTTGTA CAACATAATCTCCAATGACGAGAACAAGAACTGGAGGGTTTACTTCTATGTGTCCCCATATGATCGGACAAGATCAACACTTAGAGAGATTGGACGGTCG TTCAAGAAAGAGAGGATTATTGGGGTAAGAGAAGAGTGCAGAGTAAGAGAACAGGATTTTGGGAATTTTCAGGTGAAGGAGAGAATGAAGGTTGTTAAAG AGTCTAGAGAGAGGTTTGGGAGGTTCTTTTATAGGTTTCCTGAAGGAGAATCTGCTGCTGATGTTTTTGATCGCGTTTCAGGTTTTCTTGAATCTCTATG GAGGGACATAGATATGAAAAGGTTTCACCGAGACCCTTCCCATGACTTAAACCTTATAATTGTATCACATGGGTTAACTTGCCGCGTGTTCCTTATGAAG TGGTTCAAGTGGACTGTTCAGCAATTTGAGCACTTGAATAATCCAGGGAACTGCGAGTTTCGAATTATGCAGTTGGGGCCTGGTGGAGAATACAGCTTAG CCATCCATCACACCGATGACGAAATGCTAGAATGGGGACTCTCTCCTGAAATGATTGATGATCAAAAGTGGAGGATGCGTGCCAACAAGGGTGATTGGAA CGAAAAATGTCCTTGGTACCTTGATGAGTTTTTTGATCATGTAGCAGACTCAGACAGAGAATCCGATGACAAAGAAAATGGTTCTTCAGGCATGTGCGAA TAG
AA sequence Show only first row Show all	>Potri.005G037900.1 pacid=42802406 polypeptide=Potri.005G037900.1.p locus=Potri.005G037900 ID=Potri.005G037900.1.v4.1 annot-version=v4.1 MTEPNQEATHHHHHHHHHHLPKRIILVRHGESQGNLDTAAYTTTPDNKIQLTPSGLAQARQAGNHLYNIISNDENKNWRVYFYVSPYDRTRSTLREIGRS FKKERIIGVREECRVREQDFGNFQVKERMKVVKESRERFGRFFYRFPEGESAADVFDRVSGFLESLWRDIDMKRFHRDPSHDLNLIIVSHGLTCRVFLMK WFKWTVQQFEHLNNPGNCEFRIMQLGPGGEYSLAIHHTDDEMLEWGLSPEMIDDQKWRMRANKGDWNEKCPWYLDEFFDHVADSDRESDDKENGSSGMCE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05170			Phosphoglycerate mutase family...		Potri.005G037900 [exp]	0	1
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.011G023000 [exp]	25.09	0.6253
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Potri.009G104400 [exp]	99.67	0.6079
					Potri.018G024000 [exp]	126.90	0.6023
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	142.60	0.5883
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.004G089400 [exp]	156.33	0.5746
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.005G217700 [exp]	176.94	0.5853	TSA1.1

Compare expression of checked genes

Potri.005G037900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.