Plant FIBer expression Database

Potri.005G038100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G27380 757 / 0 GSHB, GSH2 glutathione synthetase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G026800
[exp]
1032 / 0 AT5G27380 765 / 0.0 glutathione synthetase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029976
[exp]
737 / 0 AT5G27380 697 / 0.0 glutathione synthetase 2 (.1)
Lus10035348
[exp]
728 / 0 AT5G27380 697 / 0.0 glutathione synthetase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0483 PreATP-grasp PF03917 GSH_synth_ATP Eukaryotic glutathione synthase, ATP binding domain
Representative CDS sequence
>Potri.005G038100.1 pacid=42802596 polypeptide=Potri.005G038100.1.p locus=Potri.005G038100 ID=Potri.005G038100.1.v4.1 annot-version=v4.1
ATGGGTGTTGCTTATTCATCCCTTCTTTCCCTTTCTCCCTGCACCGCTACTATACACATCACTGGTTCCTCCCTTTTCCCTTACGCATCAAAAGCAAACC
CAGAAAGAGTAATAAATTCTATTTTTAATCATACCAATAACATCTGCTTGGCTAATCTCCAAAAACCCACTAAAAAGTTTGGATCTTTTAGTCGTTTTTC
ACATAATTCTACTTGTTTAGGCTCAAAGATCGTACCTTTGAAGTGCTGTGGCAAAGTGAGGGAAATGGAGACTCAAGAGAGAATTCTTCAAAAACCCTTG
ATTGATTTTCATGGTATTGATGAAGAATTGGTTCAAAAGATGGTTTATGATGCTCTTGTTTGGAGTTCTCTTCATGGCCTTGTTGTTGGTGACAAAAGTG
TTCAGAGATCAGGAAAAGTACCTGGTGTGGGCTTGGTACACGCACCATTTGCCTTGTTGCCTATGGCATTCCCGGAAAGTCATTGGAATCTAGCATGTGA
AGTAGCACCTATATTCAATGAGCTCATTGATCGTGTGAGTTTGGATGGGAAATTTCTACAGGATGCTTTATCCAGAACGAAGAAAGTGGATGCCTTTACA
TCGGGGCTTTTAGATATTCATTCCAAGATGCTAGAAATTAACAAGAAAGAAGAGATACGCTTGGGTTTACATCGATCAGATTATATGCTTGATGAACAAA
CTAAATTCCTCCTCCAAATAGAGCTAAATACAATTTCAGCTTCATTTCCTGGCCTCGGTTGTCGTGTTAGTGAACTTCACAGGAGCTTGCTTAACTACCA
TGGAGAACATATTGGATTAGATCCCAGAAGAATACCTGGAAATACTTCTGCTGATAAGTTTGCAGAAGCGCTGGCTAAAGCTTGGACTGAGTATAATAGA
CCTAGGGCTTTAGTTATGGTGGTTGTTCAACCTGAAGAACGCAACATGTATGATCAACATTGGCTTTGTGCAGCATTGAAGGACAGGCATAATGTGACAA
CTATCCGGAAAACATTGGCAGAAATCGACAAGGAAGGGGAAATTCTACCAGATGGAACTCTGCTTGTAGGTGGCCAAGAAATTTCGGTTGTTTATTTTAG
AGCTGGGTATGCACCAACTGATTATCCTTCTGAAGCTGAATGGAGAGCTAGGCTACTTATGGAGCAGTCATCAGCTGTCAAGTGCCCATCCATATCTTAT
CATTTAGCAGGAACCAAAAAGATTCAACAAGAACTTGCAAAACCCAAAATGCTTGAAAGATTCCTAGAGAACAAAGAGGACATTTCCAAACTGCAGAAAT
GCTTCGCTGGCTTATGGAGTCTGGAAGATTCAGATATCATCAAAAAAGCCATTGAGAGGCCCGAGCTATTTGTGATGAAGCCCCAAAGAGAAGGCGGAGG
GAACAATTTCTACGGTGATGATGTGAGGACAAACCTTGTAAGATTGCAGAAAGAAGGAACCCAAGAAGATGCCGCTTACATTCTCATGCAAAGAATCTTT
CCTGCTGTTTCACCCACATTTTTGGTGCGCGAGGGCATTTGCCATAAAGATCATGCCATATCAGAACTTGGAGTGTATGGTGCTTACTTGAGGAACAAGG
AGAAAGTTATTGTAAATGAGCAGTGTGGATACTTGATGCGGACAAAGGTATCTTCATCAAATGAAGGTGGAGTTGCAGCTGGATTCGCAGTCTTGGACAG
TATATACTTGAGTTAA
AA sequence
>Potri.005G038100.1 pacid=42802596 polypeptide=Potri.005G038100.1.p locus=Potri.005G038100 ID=Potri.005G038100.1.v4.1 annot-version=v4.1
MGVAYSSLLSLSPCTATIHITGSSLFPYASKANPERVINSIFNHTNNICLANLQKPTKKFGSFSRFSHNSTCLGSKIVPLKCCGKVREMETQERILQKPL
IDFHGIDEELVQKMVYDALVWSSLHGLVVGDKSVQRSGKVPGVGLVHAPFALLPMAFPESHWNLACEVAPIFNELIDRVSLDGKFLQDALSRTKKVDAFT
SGLLDIHSKMLEINKKEEIRLGLHRSDYMLDEQTKFLLQIELNTISASFPGLGCRVSELHRSLLNYHGEHIGLDPRRIPGNTSADKFAEALAKAWTEYNR
PRALVMVVVQPEERNMYDQHWLCAALKDRHNVTTIRKTLAEIDKEGEILPDGTLLVGGQEISVVYFRAGYAPTDYPSEAEWRARLLMEQSSAVKCPSISY
HLAGTKKIQQELAKPKMLERFLENKEDISKLQKCFAGLWSLEDSDIIKKAIERPELFVMKPQREGGGNNFYGDDVRTNLVRLQKEGTQEDAAYILMQRIF
PAVSPTFLVREGICHKDHAISELGVYGAYLRNKEKVIVNEQCGYLMRTKVSSSNEGGVAAGFAVLDSIYLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G27380 GSHB, GSH2 glutathione synthetase 2 (.1) Potri.005G038100
[exp]
0 1
AT1G08320 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding pr... Potri.009G164300
[exp]
7.00 0.7345
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Potri.003G097100
[exp]
10.95 0.6811
AT3G23430 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosp... Potri.010G069000
[exp]
21.79 0.6896
AT3G62150 ABCB21, PGP21 ATP-binding cassette B21, P-gl... Potri.002G187500
[exp]
25.69 0.6818
AT2G33770 ATUBC24, UBC24,... UBIQUITIN-CONJUGATING ENZYME 2... Potri.004G043500
[exp]
26.83 0.6943
AT3G07360 ATPUB9 ARABIDOPSIS THALIANA PLANT U-B... Potri.013G052500
[exp]
29.25 0.5876
AT1G08990 PGSIP5 plant glycogenin-like starch i... Potri.013G022900
[exp]
40.24 0.6531
AT2G38800 Plant calmodulin-binding prote... Potri.001G024100
[exp]
43.26 0.6548
AT5G65210 bZIP TGA1 bZIP transcription factor fami... Potri.005G082000
[exp]
45.82 0.6699 STGA1.3
AT1G58030 CAT2 cationic amino acid transporte... Potri.019G039700
[exp]
49.56 0.6480 Pt-CAT3.3,PtrCAT3

Potri.005G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.