Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54780 370 / 9e-130 AtTLP18.3, TLP18.3 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G026400 [exp] 453 / 2e-162 AT1G54780 383 / 7e-135 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035346 [exp] 392 / 2e-138 AT1G54780 401 / 3e-142 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1) Lus10029979 [exp] 389 / 3e-137 AT1G54780 402 / 1e-142 thylakoid lumen protein 18.3, thylakoid lumen 18.3 kDa protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF04536 [poplar] [flax] TPM_phosphatase TPM domain
Representative CDS sequence Show only first row Show all	>Potri.005G038700.1 pacid=42803670 polypeptide=Potri.005G038700.1.p locus=Potri.005G038700 ID=Potri.005G038700.1.v4.1 annot-version=v4.1 ATGGAAACCTTACTTTCTTCTCACACTCTATCTCCTCTCCTCAACCCAAAACCTTCCTCTTCAAAATCCCATCTGCTACCTTCACTTCAAACAAGACCAG ACTCACTCTCTTTCATCCCCAAAACCATCACTTCTAGCCTCAAAAGGCACACCTTTGAGTCTTTGTCAGTACCCAATAGCTGGTTCAATCGTGCCCAACA GGGCCTAGCAGCACTAGCCCTTTCTTTGGCACTCAACTTTAGCCCACTGTTGTACACTGGCAATGCTCAAGCATCTGAATTTGATGTGCTCTATGAAGGG CCACCAAAAGAGTCATATATATTTGATGATGCTGGTGTGCTTAGCAGAGTGACTAAGTCTGATCTCAAGCAGCTGTTATCTGATTTGGAATCAAGGAAGA ACTTCAAGATCAATTTCGTCACTGTTAGAAAGCTTACTAGCAAAGCTGATGCTTTTGAGTATGCTGACCAAGTTCTGGAGAAATGGTATCCCTCTATTGA AGACGGCAACAATAAGGGAATTGTTGTGCTTGTGACCAGCCAAAAGGAAGGGGCAATTACAGGGGGGCCGGCGTTTATCCAAGCAGTTGGAGAAAATGTT CTTGATGCCACTGTATCAGAGAACCTACCTGTCTTGGCGACAGAAGAAAAGTACAATGAAGCAATTTATAGCAGTGCTAAGAGGTTAGTAGCCGCTATTG ATGGGCTTCCAGATCCTGGTGGTCCAAGGGCTAATGAAAATAAACGAGAATCCAACTTTAAAAGCAGGGAAGAGACAGACGAGAAGAGGGGACAATTCAC TCTAGTGGTTGGAGGTCTGTTGGTGATTGCTTTTGTTGTTCCTATGGCACAATACTATGCTTATGTTTCAAAGAAATAA
AA sequence Show only first row Show all	>Potri.005G038700.1 pacid=42803670 polypeptide=Potri.005G038700.1.p locus=Potri.005G038700 ID=Potri.005G038700.1.v4.1 annot-version=v4.1 METLLSSHTLSPLLNPKPSSSKSHLLPSLQTRPDSLSFIPKTITSSLKRHTFESLSVPNSWFNRAQQGLAALALSLALNFSPLLYTGNAQASEFDVLYEG PPKESYIFDDAGVLSRVTKSDLKQLLSDLESRKNFKINFVTVRKLTSKADAFEYADQVLEKWYPSIEDGNNKGIVVLVTSQKEGAITGGPAFIQAVGENV LDATVSENLPVLATEEKYNEAIYSSAKRLVAAIDGLPDPGGPRANENKRESNFKSREETDEKRGQFTLVVGGLLVIAFVVPMAQYYAYVSKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.005G038700 [exp]	0	1
AT2G44870			unknown protein		Potri.004G030100 [exp]	1.00	0.9852
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Potri.001G074200 [exp]	2.44	0.9815
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	2.82	0.9846	RPL1.2
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Potri.005G055800 [exp]	4.24	0.9806
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.012G090200 [exp]	6.00	0.9811
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007350 [exp]	6.70	0.9757
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Potri.010G082300 [exp]	7.34	0.9713	ATCLH1.2
AT4G26530			Aldolase superfamily protein (...		Potri.011G165000 [exp]	7.74	0.9744	Pt-FBA.1
AT5G12470			Protein of unknown function (D...		Potri.001G262200 [exp]	7.93	0.9788
AT3G04550			unknown protein		Potri.013G044900 [exp]	9.16	0.9765

Compare expression of checked genes

Potri.005G038700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.