Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63480 533 / 0 ATP binding microtubule motor family protein (.1.2) AT1G59540 227 / 7e-66 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G23670 228 / 2e-65 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT4G14150 228 / 3e-65 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1) AT3G54870 224 / 3e-64 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT1G12430 223 / 3e-64 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT3G10180 220 / 2e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 219 / 5e-62 POK2 phragmoplast orienting kinesin 2 (.1) AT5G47820 215 / 5e-61 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G01950 212 / 2e-60 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149000 [exp] 222 / 4e-63 AT3G23670 1426 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.014G013300 [exp] 219 / 8e-63 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G235500 [exp] 219 / 4e-62 AT3G23670 1399 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Potri.004G193700 [exp] 218 / 1e-61 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 216 / 7e-61 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 215 / 1e-60 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 215 / 1e-60 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.003G117000 [exp] 213 / 2e-60 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.014G070900 [exp] 211 / 9e-60 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029983 [exp] 431 / 2e-146 AT3G63480 466 / 1e-160 ATP binding microtubule motor family protein (.1.2) Lus10035344 [exp] 229 / 2e-71 AT3G63480 253 / 2e-81 ATP binding microtubule motor family protein (.1.2) Lus10035343 [exp] 208 / 8e-64 AT3G63480 228 / 8e-72 ATP binding microtubule motor family protein (.1.2) Lus10021969 [exp] 222 / 6e-63 AT3G23670 689 / 0.0 phragmoplast-associated kinesin-related protein, putative (.1.2) Lus10009241 [exp] 219 / 2e-62 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10027934 [exp] 219 / 8e-62 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10012048 [exp] 218 / 1e-61 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1) Lus10038007 [exp] 216 / 1e-61 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10010441 [exp] 216 / 8e-61 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 216 / 9e-61 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.005G038900.1 pacid=42803225 polypeptide=Potri.005G038900.1.p locus=Potri.005G038900 ID=Potri.005G038900.1.v4.1 annot-version=v4.1 ATGATGTCGAATATAACAGTATGCGCTCGCTTCAGGCCGTTGAGCACCAAGGAGAGAAAAGACAGCTGCGACAGCATCTGCATTAGCAGCATAGACAGTG AATCTTTCATTTTCAAGGATGAGAAAGATGAGTGTACATATAGCTTTGATAAGGTGTTTTATGAGGAATCTATGCAAGCTGATGTGTATGAATTTTTAGC TCTGCCTATTGTTAAAGATGCTGTTAAAGGAGTAAATGGGACAATCATTACTTATGGACAGACTGGAGCTGGGAAGACATATAGCGTGGAGGGGCCCAGC ATCTTAGAATGTGATGTGCAAAAGAAAGGATTACTTCCAAGAGTAGTGGATGGACTATTCGAGTGTATTAAATCTGCTGATGAGTCAACAAAATACACAA TCAAATTATCAATGGTAGAGATCTACATGGAGAAAGTCAGGGACCTCCTTGATTTAACAAAGGACAACATACAGATTAAAGAGAACAAAGAGCAAGAAAT ATTGCTATCAGGAGTTACAGAGATCACCATATCAGACCCAGAAGGAGCTTTGCAAAGTCTATCTGATGGGATAGTTAACAGAGCAGTTGGAGAGACTCAA ATGAACGTTGGCAGCAGTAGAAGTCATTGTATTTACATTTTGACTGTTCAGCTAGAGTCGACTACAGATAAGAGGGTGAAAACTGGAAAAGTAATTCTTG TGGACTTGGCGGGGTCTGAAAAGGTAGAGAAAACAGGAGCTGAAGGAAAAGTTCTTGAAGAATCTAAGACAATCAACAAATCCCTATCAGCTCTAGGAAA TGTAATAAATGCCCTGACATGTGGTCCATCGACCAGATCAAGCCATATTCCTTTTCGTGATTCAAAACTTACTCGGATTCTACAAGATGCTCTTGGAGGG AACTCCAGGACTGCTTTGCTGTGCTGTTGCTCACCGAGCGCTTCAAATGCATCGGAAACTCTGTCTACCATTCGCTTTGGTATGAGGGCAAAGCATATAA AAGCATCACCTTTAGTCAGCCGCAGAGAAGATAAACATGCCAAAAAACATGGAGATATCACCCCAACTAAAGATGACTCATGTGACCGAATTCTAAATAA GTTGAGGGAGAGACTGGATGAGGAAGATGTGAAGTTACTTGAGGAGTTATTCATACTGGAAGGATTATTCTTTGACGTTACTTCAGTAGAAGATCTGGAA TCAGCCTATCAAGATGTTACATCATGGACAATTTCCTCATTACAACAGGCAGTAGAAGAGCTCACATACACTGTCGAGGAGCTTAAGAGAGAGAATAAGG ATCTTAAGGCCAGACTGGCAGATGCAGAAAGGTTTGACGCCATGCGCAAGAAGACTGAAGATAATGCTGGAGTTCTGCTTAAGATTTCAGGAATTATCAG CTTCTTATTTTCATGGGCTGGGTCATTCAGCCCTCTGAAGATGCCGAGTTGA
AA sequence Show only first row Show all	>Potri.005G038900.1 pacid=42803225 polypeptide=Potri.005G038900.1.p locus=Potri.005G038900 ID=Potri.005G038900.1.v4.1 annot-version=v4.1 MMSNITVCARFRPLSTKERKDSCDSICISSIDSESFIFKDEKDECTYSFDKVFYEESMQADVYEFLALPIVKDAVKGVNGTIITYGQTGAGKTYSVEGPS ILECDVQKKGLLPRVVDGLFECIKSADESTKYTIKLSMVEIYMEKVRDLLDLTKDNIQIKENKEQEILLSGVTEITISDPEGALQSLSDGIVNRAVGETQ MNVGSSRSHCIYILTVQLESTTDKRVKTGKVILVDLAGSEKVEKTGAEGKVLEESKTINKSLSALGNVINALTCGPSTRSSHIPFRDSKLTRILQDALGG NSRTALLCCCSPSASNASETLSTIRFGMRAKHIKASPLVSRREDKHAKKHGDITPTKDDSCDRILNKLRERLDEEDVKLLEELFILEGLFFDVTSVEDLE SAYQDVTSWTISSLQQAVEELTYTVEELKRENKDLKARLADAERFDAMRKKTEDNAGVLLKISGIISFLFSWAGSFSPLKMPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63480			ATP binding microtubule motor ...		Potri.005G038900 [exp]	0	1
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129740 [exp]	2.00	0.9437
AT2G33793			unknown protein		Potri.004G042800 [exp]	3.00	0.9451
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Potri.008G126300 [exp]	5.65	0.9130
AT1G71760			unknown protein		Potri.002G062800 [exp]	5.83	0.9027
AT3G50120			Plant protein of unknown funct...		Potri.016G039700 [exp]	9.79	0.9062
AT5G52800			DNA primases (.1.2.3)		Potri.017G148000 [exp]	11.95	0.9064
AT5G50970			transducin family protein / WD...		Potri.015G106300 [exp]	14.07	0.8960
AT1G18090			5'-3' exonuclease family prote...		Potri.015G041400 [exp]	14.14	0.9123
AT1G72250			Di-glucose binding protein wit...		Potri.001G436200 [exp]	16.06	0.9138
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	17.14	0.9043

Compare expression of checked genes

Potri.005G038900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.