Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27400 362 / 5e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27410 347 / 1e-110 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT4G35987 56 / 1e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G63855 52 / 1e-07 Putative methyltransferase family protein (.1.2.3) AT1G79915 47 / 9e-06 Putative methyltransferase family protein (.1) AT1G73320 44 / 0.0001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G26810 43 / 0.0002 Putative methyltransferase family protein (.1.2.3) AT5G49560 43 / 0.0002 Putative methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G057000 [exp] 48 / 5e-06 AT4G35987 410 / 5e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G181200 [exp] 48 / 7e-06 AT1G79915 308 / 4e-104 Putative methyltransferase family protein (.1) Potri.009G068400 [exp] 47 / 1e-05 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.005G109000 [exp] 46 / 1e-05 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.017G153900 [exp] 44 / 0.0001 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G148200 [exp] 43 / 0.0002 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015166 [exp] 345 / 3e-117 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031516 [exp] 327 / 4e-110 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028446 [exp] 52 / 5e-07 AT4G35987 402 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041898 [exp] 52 / 6e-07 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10041869 [exp] 49 / 2e-06 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10035886 [exp] 50 / 3e-06 AT1G79915 291 / 1e-97 Putative methyltransferase family protein (.1) Lus10028415 [exp] 47 / 6e-06 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3) Lus10031894 [exp] 48 / 7e-06 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF10294 [poplar] [flax] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G039000.3 pacid=42804085 polypeptide=Potri.005G039000.3.p locus=Potri.005G039000 ID=Potri.005G039000.3.v4.1 annot-version=v4.1 ATGGCAGAACCGAAGCTAGACCCCACCATCCCTCCAGGCCTCCACCTAGTCTCCGCCTTCCTCTCCATGGAGCCCACTAACACCTTACTCTCCCTGTCAA GAGAATGTGGTGGAGGATTGGTTACAGAGGGAGTGCAGAGGTTTATTTGGGATCACTGTATAAGCAACGAAGCTGGTGAAAAGGGGTATGGGCCTTACTT GAGGAATTTTGTGAAGAGGCTTATCTCTGAAGTAGAATCGAGAAATGGGACAGTTTTGGATGAGTTATATGAACGATGTGGTTATTACATGAGTTCATTA AAGGATGATCGTCTGGTAAAAGGAAGCGCCAGGATCCACAAATGCATTTCTTTTCTTTTTCCTGATGTGTTTTTAGGTTGTGAACCTCCAAGTTGTCCCA AGTCAAGCAATCTGGTGGTTCCACTGCATTGTTCACTCAACATGCTTGAAGGAGACACTGGGTGTTCTGTTTGGCCCTCAAGCCTATATTTGTCGGAATT TGTACTCTCTTTTCCAGACATATTCTCCAACAAATCATGCTTTGAGGTTGGTTCTGGTGTTGGTTTGGTTGGAATTTGTCTTTCTCATGTAAAAGCTTCC CAGGTTATATTAAGTGATGGTGACCTGTCAACTTTATCTAACATGAAGCTTAATTTGAAGCTAAACCAGTTGAGTGCTGAAACTGATGTGCTAGAAAGAT TTGGCGAAGATCCAAATACAGTACAAGCTGAATTGTATAATAAATCTAAGGTGAAATGCTTTCATCTGCCATGGGAATCCGCCACAGAAAGTGAACTTGA AGACTACTTACCTGACATCATTTTGGGAGCAGATGTTATTTATGATCCATCCTGCCTTCCACACCTTCTTCGAGTGCTTGTCATTCTTTTGAAACAAAAG AAAGCGTACACTCAGACTTGGGAAGAGAGTTGTGAGGGCCGATTGCAAGATGCTGAACACATTGATGTCAACGGCGCTTCTGAAGGGAAATCTCTCTTTG CCCATGATATACAGTGTGTTACCATTCAAAATGGCAACAGAACTGATCCTTGTCAAGTCGAGGAACTTCATGGTGGTTCTTCAGTTGCCAGACTGATGAA ATGTCCCGTGGCTTATATTGCCTCGGTTATTCGCAATATTGATACTTTTAATTGTTTTCTTAAACTAGCAGAAGAAGCTAACCTTGTAATCGCTGACATA ACTGAAGCGCTAGTGCCCTTAAATTTGCTTCCATACATGCAGTCATACAACCGATCAAGTATACGTTTATTTACTGTAAAATGCAAGTAA
AA sequence Show only first row Show all	>Potri.005G039000.3 pacid=42804085 polypeptide=Potri.005G039000.3.p locus=Potri.005G039000 ID=Potri.005G039000.3.v4.1 annot-version=v4.1 MAEPKLDPTIPPGLHLVSAFLSMEPTNTLLSLSRECGGGLVTEGVQRFIWDHCISNEAGEKGYGPYLRNFVKRLISEVESRNGTVLDELYERCGYYMSSL KDDRLVKGSARIHKCISFLFPDVFLGCEPPSCPKSSNLVVPLHCSLNMLEGDTGCSVWPSSLYLSEFVLSFPDIFSNKSCFEVGSGVGLVGICLSHVKAS QVILSDGDLSTLSNMKLNLKLNQLSAETDVLERFGEDPNTVQAELYNKSKVKCFHLPWESATESELEDYLPDIILGADVIYDPSCLPHLLRVLVILLKQK KAYTQTWEESCEGRLQDAEHIDVNGASEGKSLFAHDIQCVTIQNGNRTDPCQVEELHGGSSVARLMKCPVAYIASVIRNIDTFNCFLKLAEEANLVIADI TEALVPLNLLPYMQSYNRSSIRLFTVKCK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27400			S-adenosyl-L-methionine-depend...		Potri.005G039000 [exp]	0	1
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.018G018800 [exp]	1.00	0.8900
AT1G14300			ARM repeat superfamily protein...		Potri.013G124050 [exp]	3.46	0.7998
AT1G05070			Protein of unknown function (D...		Potri.005G038000 [exp]	4.58	0.7867
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.018G049301 [exp]	6.92	0.7389
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.008G207000 [exp]	6.92	0.8159	RPL3.2
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.009G047500 [exp]	10.81	0.7562
AT5G57280		RID2	root initiation defective 2, S...		Potri.018G049800 [exp]	13.03	0.7935
AT5G57100			Nucleotide/sugar transporter f...		Potri.018G139500 [exp]	13.11	0.7163
AT5G67240		SDN3	small RNA degrading nuclease 3...		Potri.007G048000 [exp]	13.26	0.7749
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Potri.019G014396 [exp]	15.29	0.8057

Compare expression of checked genes

Potri.005G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.