Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AAT.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27410 879 / 0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT3G05190 867 / 0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT3G49680 78 / 3e-15 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT5G65780 72 / 2e-13 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT1G50110 67 / 6e-12 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT5G57850 64 / 7e-11 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT3G19710 61 / 7e-10 BCAT4 branched-chain aminotransferase4 (.1) AT1G50090 60 / 1e-09 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G10060 56 / 4e-08 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT1G10070 54 / 2e-07 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039000 [exp] 84 / 3e-17 AT5G57850 473 / 2e-167 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.007G008000 [exp] 73 / 1e-13 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.009G082700 [exp] 72 / 2e-13 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3) Potri.009G082600 [exp] 64 / 1e-10 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.002G113600 [exp] 59 / 3e-09 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035342 [exp] 885 / 0 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10029984 [exp] 845 / 0 AT5G27410 869 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10011382 [exp] 75 / 3e-14 AT5G57850 476 / 2e-168 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Lus10006441 [exp] 74 / 1e-13 AT5G57850 474 / 6e-168 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Lus10011567 [exp] 73 / 2e-13 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10019258 [exp] 72 / 3e-13 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10011604 [exp] 66 / 2e-11 AT3G49680 568 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10032806 [exp] 60 / 2e-09 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007246 [exp] 58 / 7e-09 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2) Lus10028247 [exp] 45 / 0.0001 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [poplar] [flax] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Potri.005G039100.1 pacid=42805186 polypeptide=Potri.005G039100.1.p locus=Potri.005G039100 ID=Potri.005G039100.1.v4.1 annot-version=v4.1 ATGGTCGGGCAAGAGCAAGGAGAGGGAGAAGTAGAGGTGATTCACTCATGGTCTGCTCCAAGATCTCTTAGCACCAGTCTAATGTACTCTTTTGCTCAGA GGGATGACATGGAAGTGCTTGATGAACCTCTCTATGCGACTTTCCTGAAGGTATCTGATGTTGAAAGGCCATACAAGGAGGAGCTTCTGTCCAAAATGGA ATCTGATGGAGATAAGGTTGTAAAAGAGATAATTTTTGCTCCAGGAGAAAAGAAGTACCGGTTTTGTAAGCATATGTCAAAGCAACGGTTACCTGGTTTG CCCAGTGATCTAATAAAGAAAGGAAAGCACTTCATATTGATACGTAATCCCCTTGATATACTGCCATCTTTTGGAAAGGTTGTACCTCCATCCTTTCTTG ATTTAGGTTTGTCAGAGCTGGTCTCCATATACAATGACCTCTGTCAGTTGGGAAAGCGCCCACCTGTTATTGATGCAACAGACCTTGCACAAAATCCTGA GGCTACTTTGCATAGTCTTTGTGAAGATTTGGGTATTCCTTTTCAAGACTCAATGCTCAGATGGGAAGCTGGTCCGAAGCTGATTGATGGAATGTGGGCT CCATGGTGGTACAAAAGTGTGCATAAATCTACTGGTTTCTCATCAACAAGAAAGTATCCTGAGCCATTTCCACATTCTCACTATGACTTGCTGGAGCAAA GTCTACCTTTGTACAACTGGCTCAGACGCCACGTGAGACAGGCATCAACCCTATTGAAGACCCCCTTACCTCCACCTGACCTTCCAGTCCCTGCAAATGA GAAGCTGCTTGCATGGGTTGGTGATGAAATTCTACCCCGTGAAAGTGCCAAGGTTTCTGTGTTTGACTCAGTTGTCCAAGGTGGTGATTCGGTGTGGGAG GGACTTCGAGTTTACAGAGGGAAGATATTTAAGCTTGAAGAGCATTTAGACAGGTTGTTTGACTCAGCAAAGGCTCTTGCTTTCAAGAATGTTCCAACTC GTGAAGAAGTTAAGGAAGCCATTTTCAGAACATTAATTAGGAATGGAATGTTTGATAATTCACATATTCGACTATCCCTCACAAGAGGAAAGAAGGTTAC TTCTGGGATGAGCCCAGCATTTAACCTCTACGGCTGCACCCTAATTGTGCTTCCAGAATGGAAACCCCCTGTATATGATAATACACATGGTGTAACTCTG GTGACTGCTACCACACGGCGTAATTCACCAAATAATTTGGATTCGAAAATTCACCACAACAACCTGCTCAATAACATACTTGCAAAGATAGAAGGGAATA ATGCAAATGCTGATGACGCAATCATGCTTGACAAGGATGGTTTTGTGTCGGAAACAAATGCTACAAACATCTTTTTAGTAAAAAAGGGCAGAGTTCTGAC ACCTCATGCTGATTACTGCCTTCCTGGTATCACTCGAGCTACTGTAATGGATTTAGTGGTGAAAGAGGGATTGGTGTTAGAGGAGAGAAGAATCAGCCTG TCAGAATTCCACACTGCAGATGAGGTATGGACGACTGGAACAATGGGAGAGCTCACCCCAGCTGTGAAGATCGATGGACGTGAAGTTGGCGATGGACAAG TGGGACCTGTGACTCGAAGGTTGCAAAAAGCTTACAAAAAGCTTACAGAAGAGTCAGGAGTGCCCATACCATCATATCAGGAGAATTAA
AA sequence Show only first row Show all	>Potri.005G039100.1 pacid=42805186 polypeptide=Potri.005G039100.1.p locus=Potri.005G039100 ID=Potri.005G039100.1.v4.1 annot-version=v4.1 MVGQEQGEGEVEVIHSWSAPRSLSTSLMYSFAQRDDMEVLDEPLYATFLKVSDVERPYKEELLSKMESDGDKVVKEIIFAPGEKKYRFCKHMSKQRLPGL PSDLIKKGKHFILIRNPLDILPSFGKVVPPSFLDLGLSELVSIYNDLCQLGKRPPVIDATDLAQNPEATLHSLCEDLGIPFQDSMLRWEAGPKLIDGMWA PWWYKSVHKSTGFSSTRKYPEPFPHSHYDLLEQSLPLYNWLRRHVRQASTLLKTPLPPPDLPVPANEKLLAWVGDEILPRESAKVSVFDSVVQGGDSVWE GLRVYRGKIFKLEEHLDRLFDSAKALAFKNVPTREEVKEAIFRTLIRNGMFDNSHIRLSLTRGKKVTSGMSPAFNLYGCTLIVLPEWKPPVYDNTHGVTL VTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNANADDAIMLDKDGFVSETNATNIFLVKKGRVLTPHADYCLPGITRATVMDLVVKEGLVLEERRISL SEFHTADEVWTTGTMGELTPAVKIDGREVGDGQVGPVTRRLQKAYKKLTEESGVPIPSYQEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27410			D-aminoacid aminotransferase-l...		Potri.005G039100 [exp]	0	1	Pt-AAT.3
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.009G096700 [exp]	1.00	0.8882
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048700 [exp]	2.82	0.8646
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Potri.018G031800 [exp]	8.71	0.7948
AT5G07900			Mitochondrial transcription te...		Potri.004G222000 [exp]	8.77	0.8056
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	11.09	0.8470
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Potri.010G148100 [exp]	11.22	0.8096	Pt-GAL1.3
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048900 [exp]	11.53	0.8207
AT1G08920		ESL1	ERD (early response to dehydra...		Potri.005G037000 [exp]	12.40	0.7926
AT5G65620			Zincin-like metalloproteases f...		Potri.007G004600 [exp]	12.60	0.7563
AT5G36930			Disease resistance protein (TI...		Potri.001G066500 [exp]	14.31	0.8249

Compare expression of checked genes

Potri.005G039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.