Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08920 460 / 2e-159 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT5G27360 448 / 1e-154 SFP2 Major facilitator superfamily protein (.1) AT1G08930 447 / 3e-154 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G27350 444 / 3e-153 SFP1 Major facilitator superfamily protein (.1) AT1G54730 431 / 4e-148 Major facilitator superfamily protein (.1.2.3) AT3G05165 426 / 3e-146 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05160 410 / 3e-140 Major facilitator superfamily protein (.1.2) AT3G05400 400 / 3e-136 Major facilitator superfamily protein (.1.2) AT5G18840 399 / 3e-135 Major facilitator superfamily protein (.1) AT1G08890 394 / 8e-134 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037000 [exp] 538 / 0 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 528 / 0 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.013G027800 [exp] 506 / 1e-177 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 487 / 4e-170 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.010G026500 [exp] 419 / 4e-143 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 409 / 3e-139 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 402 / 1e-136 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 393 / 5e-133 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.007G024300 [exp] 314 / 4e-102 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033812 [exp] 516 / 0 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029960 [exp] 453 / 1e-155 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10033814 [exp] 450 / 3e-155 AT1G08920 466 / 8e-162 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Lus10035354 [exp] 448 / 1e-154 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 444 / 2e-152 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 405 / 2e-137 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029961 [exp] 410 / 8e-137 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10012780 [exp] 399 / 4e-135 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029964 [exp] 386 / 2e-129 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3) Lus10008183 [exp] 378 / 5e-127 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.005G039900.1 pacid=42804442 polypeptide=Potri.005G039900.1.p locus=Potri.005G039900 ID=Potri.005G039900.1.v4.1 annot-version=v4.1 ATGGCAGCATCTACAAGGTCTTTACTTCTCGAAGATGGAAATCCTACTGTGAATGATAATGGCGACTGCAACGAAGAAAGAAGTCATGACTCCTCCATCA CTCCCATTCTTGTGCTTAGCACCTTCATTGCCGTCTGCGGCTCTTTCTGTTACGGGTTCGCTGTGGGCTATTCATCAGCAGCTGAATCTGGAATCAGGAA AGACTTGGGCCTCTCGGTGTCAGAATACTCAGTTTTTGGTTCAATACTGACAATCGGAGGAATGATCGGTGCGATTCCAAGTGGGAAGATTGCAGATTTT ATTGGCCGAAAACGAACAATGTGGCTATCTGAAATATTTTGCATCCCAGGATGGCTCCTAATAGCGTTCGCTAAGGATGCTTGGTGGTTGGATATTGGAA GACTATTGATTGGAGTTGGAGTTGGGCTTATTACATATGTGGTCCCAGTATATATCGCAGAAATAACACCCATGAATCATAGGGGAGGATTTACATCAGC TCAGCAGTTGATGGTAAGTCTCGGCTTCGCCCTTGTATATTTCATTGGAAATATTATTTCTTGGCGTGCTTTATCTCTGATAGTTCTTATTTCATGTATA CTGCAACTTGTGGGTTTATTCTTCATTCCAGAGTCACCCAGATGGTTGGCAAAACTTGATCGTGAGAAAGAGTTTGAGACTACTTTGCAATGGCTTAGAG GAATGAATGTTGATATTTCTCAAGAAGCAAATGATATCAGAGATACTATAGATGTCTATCAACACAACTCAAAAGCTAAATTTCTGAGCTTATTTCAGAG GAAATATGCTTATCCAATAATTGTTGGAGTAGGACTAATGGTTTTGCAACAATTTGGAGGAACTAGTGCTGTGGCATATTATTCTAGCTCTATATATGTT AAAGCCAATTTTTCAACTATCATTGGTACTACAACGGCAGGCATTATGCAGATCCCAGCGTCTATTGCAGGTGTACTCTTGTTGGATATATCTGGAAGAA GAAGACTTCTTTTGGTTTCTGCCATTGGAACGTGTTTAAGTTTAGTCCTCGTTGGGTTGTCATTCCTCTTGCAGGAACTACACTATTTGAAAGAGCTAAC TCCGATTTTGACATTTATTGGCATATTGGGTTATGGTGTTACTTTTGCAGTAGGCATGTCAGGAATACCTTGGGTTATAATGTCAGAGATATTTCCTCTA GATGTGAAAGCCTCCGCTGGAAGTTTAGTGACTTTAGTCAATTGGTCCGGCTCTTGGATTGTGACATACTCATTCAATTTTATGATGGAGTGGAGCTCGA CAGGAACTTTTTTCTTCTTCGCCACTATATGTGGTGTCACAGCCTTGTTCATTTGGAAGTTGGTGCCTGAGACTAAAGGACGGACATTGGAAGAAATACA GGCAACCATCACTCATTTTCCATCCGATGTCTGCTAA
AA sequence Show only first row Show all	>Potri.005G039900.1 pacid=42804442 polypeptide=Potri.005G039900.1.p locus=Potri.005G039900 ID=Potri.005G039900.1.v4.1 annot-version=v4.1 MAASTRSLLLEDGNPTVNDNGDCNEERSHDSSITPILVLSTFIAVCGSFCYGFAVGYSSAAESGIRKDLGLSVSEYSVFGSILTIGGMIGAIPSGKIADF IGRKRTMWLSEIFCIPGWLLIAFAKDAWWLDIGRLLIGVGVGLITYVVPVYIAEITPMNHRGGFTSAQQLMVSLGFALVYFIGNIISWRALSLIVLISCI LQLVGLFFIPESPRWLAKLDREKEFETTLQWLRGMNVDISQEANDIRDTIDVYQHNSKAKFLSLFQRKYAYPIIVGVGLMVLQQFGGTSAVAYYSSSIYV KANFSTIIGTTTAGIMQIPASIAGVLLLDISGRRRLLLVSAIGTCLSLVLVGLSFLLQELHYLKELTPILTFIGILGYGVTFAVGMSGIPWVIMSEIFPL DVKASAGSLVTLVNWSGSWIVTYSFNFMMEWSSTGTFFFFATICGVTALFIWKLVPETKGRTLEEIQATITHFPSDVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08920		ESL1	ERD (early response to dehydra...		Potri.005G039900 [exp]	0	1
AT5G37730			unknown protein		Potri.004G089700 [exp]	1.00	0.7940
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	10.19	0.6899	Pt-FRD3.1
AT4G37030			unknown protein		Potri.007G042400 [exp]	10.72	0.6705
AT2G37130			Peroxidase superfamily protein...		Potri.006G129900 [exp]	11.74	0.6692
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.001G270000 [exp]	23.47	0.6399
AT3G52480			unknown protein		Potri.006G204400 [exp]	26.45	0.6616
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.006G169700 [exp]	27.74	0.6690
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.011G065500 [exp]	32.31	0.6636
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.015G029400 [exp]	33.82	0.6301
AT2G45720			ARM repeat superfamily protein...		Potri.002G153700 [exp]	34.85	0.6486

Compare expression of checked genes

Potri.005G039900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.