Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54730 430 / 1e-147 Major facilitator superfamily protein (.1.2.3) AT2G48020 420 / 5e-144 Major facilitator superfamily protein (.1.2) AT4G04750 416 / 5e-142 Major facilitator superfamily protein (.1) AT3G20460 410 / 1e-139 Major facilitator superfamily protein (.1) AT5G18840 404 / 3e-137 Major facilitator superfamily protein (.1) AT3G05165 400 / 3e-136 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05160 394 / 5e-134 Major facilitator superfamily protein (.1.2) AT1G08930 390 / 1e-131 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05400 388 / 2e-131 Major facilitator superfamily protein (.1.2) AT5G27350 380 / 2e-128 SFP1 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027500 [exp] 476 / 1e-165 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G037000 [exp] 453 / 1e-156 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 441 / 6e-152 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G039900 [exp] 438 / 1e-150 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.002G212900 [exp] 436 / 6e-150 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 423 / 5e-145 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 419 / 4e-143 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027800 [exp] 405 / 8e-138 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 345 / 3e-114 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035354 [exp] 446 / 8e-154 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10033812 [exp] 440 / 2e-151 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10029960 [exp] 421 / 3e-143 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10008183 [exp] 414 / 5e-141 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 409 / 3e-139 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029962 [exp] 407 / 4e-138 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10029629 [exp] 405 / 7e-138 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 393 / 2e-129 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035356 [exp] 385 / 2e-129 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10008179 [exp] 374 / 2e-126 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.005G040000.1 pacid=42803247 polypeptide=Potri.005G040000.1.p locus=Potri.005G040000 ID=Potri.005G040000.1.v4.1 annot-version=v4.1 ATGGGGGGATCTGAGCAAGCAAGAAGGCCTCTGCTGGTTGCTGATCAAGAAGATCCTCACTATCATCAAAGTAGCAACGGTGGTGTTGACGGTAACTCTA CTGCCACGGGTTTTCTTGTTTTTAGCACCATTGTTGCAGCTACTTGTTCTTTCACTTCTGGCTATTGTATTGGATATTCGTCCCCTGCTGAATATGGAGT CTTAGCTGATTTGAGCCTCTCTATGGCAGAGTACTCGGTTTTTGGTTCAATGTTGGCTGTTGGAGGAATGATTGGTGCATTGATGAGCGGGAAGACAGCC GATTACTTTGGCCATAGAACTACAATGTGGATCATCAATGTCTTCTTCATCTTAGGGTGGCTTGCAATAGCATTCACCAAGGTTTCTTGGTTGCTTGACC TTGGAAGACTTCTGCAAGGAATTGGAATTGCTCTTACTTCTTATGTGGGAAATATTTTTATTGCAGAAATAACACCCAAGAATCTTAGAGGAGGACTTAT GACATTCAATCCGTGGATGACTGGTTCTGGAGTAGCAATTGTATATCTTATTGGTTCGGTTGTAAAATGGCGTGGACTGGCTCTAATAGGAAGCATTCCA TGTCTCCTACAGATTCTTTGTCTATTCTTCATCCCAGAGTCCCCCAGATGGCTATTAAAGAATGGTCGTAAAAAGGAGTTTGAAGGTGTTTTGCAGCGTC TTAGAGGAAAGAAAGCTGACATTTCTCCAGAAGCAGCTGAGATCAAAGAATATGCAGAATTTATTCAACTTCTCTCAGAGAATAAAATTCTGGACTTGTT TCAGAAGAAGTATGCTCGACCAATCATTGTTGCAGTTGGGCTGATGACACTCACACAATTTTCAGGGTTACCTGGCTATACATTTTACATGACTAATATT TTTGTTTTGGCTGGTATTTCATCTAAAGCTGGATATGTAACATTGGCCATCGTAAAGATTCTGTCAACCACTATGGCTATATTCTTAATTGACAAATTCG GAAGGCGGACGCTTTTGATGGTTTCTGCAGCTGGGACTTGCTTGGGTTCTTTGCTTACTGGATTCTCGTTCTCGTTGCAGCAGGACCATCACTATTGGAT ATCTTCATTAGCACTCATGGGAGTGTCGGTTTATTTCGTATCTTTCAATCTAGGCATTTCAGGAATACCATGGATTATAATGTCTGAGATATTCCCAGTA AATGTGAAAGGATCAGCTGGAAGCCTTTGCAATTTAATATATTGGTTCTCTAGTTGGGTTGTTTCTTACACCTTCAACTTTCTATTGGAATGGAGCTCTA CAGGAACGTTCATCATATTTGCAGGTGTTTCTGCATTCGGTTTTTTATTCACAGTAATGCTGGTGCCGGAGACTAAAGGAAGGTCACTAGAAGAAATACA AGCATCAGTGACCAATGTTTTGCATTAA
AA sequence Show only first row Show all	>Potri.005G040000.1 pacid=42803247 polypeptide=Potri.005G040000.1.p locus=Potri.005G040000 ID=Potri.005G040000.1.v4.1 annot-version=v4.1 MGGSEQARRPLLVADQEDPHYHQSSNGGVDGNSTATGFLVFSTIVAATCSFTSGYCIGYSSPAEYGVLADLSLSMAEYSVFGSMLAVGGMIGALMSGKTA DYFGHRTTMWIINVFFILGWLAIAFTKVSWLLDLGRLLQGIGIALTSYVGNIFIAEITPKNLRGGLMTFNPWMTGSGVAIVYLIGSVVKWRGLALIGSIP CLLQILCLFFIPESPRWLLKNGRKKEFEGVLQRLRGKKADISPEAAEIKEYAEFIQLLSENKILDLFQKKYARPIIVAVGLMTLTQFSGLPGYTFYMTNI FVLAGISSKAGYVTLAIVKILSTTMAIFLIDKFGRRTLLMVSAAGTCLGSLLTGFSFSLQQDHHYWISSLALMGVSVYFVSFNLGISGIPWIIMSEIFPV NVKGSAGSLCNLIYWFSSWVVSYTFNFLLEWSSTGTFIIFAGVSAFGFLFTVMLVPETKGRSLEEIQASVTNVLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54730			Major facilitator superfamily ...		Potri.005G040000 [exp]	0	1
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.019G070975 [exp]	3.00	0.9182
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.008G142400 [exp]	8.48	0.8796
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Potri.006G184900 [exp]	9.11	0.8529
					Potri.016G121650 [exp]	13.56	0.8953
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Potri.012G132500 [exp]	20.56	0.8883	Pt-PGM.4
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.016G078600 [exp]	21.28	0.8958
AT1G50575			Putative lysine decarboxylase ...		Potri.008G180300 [exp]	22.44	0.8825
AT5G09820			Plastid-lipid associated prote...		Potri.001G309300 [exp]	24.59	0.8829
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	28.91	0.8779
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	30.51	0.8900

Compare expression of checked genes

Potri.005G040000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.