Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 614 / 0 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 340 / 1e-108 Protein kinase superfamily protein (.1) AT3G24550 258 / 3e-77 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G34440 253 / 5e-75 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT3G24540 247 / 1e-74 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G68690 250 / 8e-74 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G49270 250 / 8e-74 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT1G70460 249 / 1e-73 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 248 / 7e-73 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G56120 252 / 1e-72 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028000 [exp] 806 / 0 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 636 / 0 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 635 / 0 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.017G132800 [exp] 350 / 5e-112 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 344 / 1e-109 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 341 / 5e-109 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 341 / 9e-109 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 259 / 1e-80 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 256 / 8e-80 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042678 [exp] 609 / 0 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042679 [exp] 566 / 0 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027971 [exp] 562 / 0 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008186 [exp] 561 / 0 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008187 [exp] 561 / 0 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027970 [exp] 550 / 0 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 543 / 0 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029626 [exp] 535 / 0 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029711 [exp] 321 / 6e-101 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10018855 [exp] 311 / 7e-100 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G040200.1 pacid=42805121 polypeptide=Potri.005G040200.1.p locus=Potri.005G040200 ID=Potri.005G040200.1.v4.1 annot-version=v4.1 ATGTTCCTCTTTCAGTTCAAGGTTTTTCAATTAGTCCTGCTCTTAGCCCTTTCAGAATTCTGTTTTCAAAGTGCTAATTGCTGGGAAATCTCAAACAGAA ACCTTTTTGAAGCCTCTTGCCCATTAAACTACAGTGTCATTCGTGAATTAGTCAGTAAAGCTCGTCCGAAACATTCATTTATTGATCTGCCTAATCAATG TCAATTCGTTCCTGATGGAATTCGTTTTGTTCGGTCAGAATATCTGCGAACCGCCAGGTCCTTTGTTCCTCCTCCTGATACATTTCAGACATGTTGGCAA TCATATCGGAACGTGATTAGCGAGGTTTCAGATGGTCTTGATATCCAGTCTGGCTGTGGTTATCAGGCTGGATGGATCTCAAAGGGCTGTATGAATATTA CATCTGTGGCACAGTTTGAGATCAAATTTCCCGAGTCCAAGTTGCAAGAGATGAAGCTTTATTGTAATCGATCTCTGGATGATGACCTTGCTTGTGGTTC TTGTACCAAGAAATTGTTGAGTCTTGGGGATCTGTATCTTCGTGATCCTCAACCTGTGAATGCCTCAGATTGTTCTGGCTATCTGTCTATGTATGCAGCT GCCATTATTAATCGGTTTGGACCGACCGATCCCGGAACTGCAAAGTGCTTGTTCAGGCTTAAGTATTCAGTGAAGTCCACAACCAATGAGCATCACAAGG CTGTGATTGCTGGCATTGCTGCGGGTTCCGTGTTTGGTGTCTTGGGGGGCTTTATTGCAGTTTGCTTACGCTGGAAGCTACACGGGAAAAGCGACAAGGA AAAGATCAGTCCAGATCTAGAGGATGCTAGTTTGGATCTTGGGTTTGGATTGCACATTAGAAGCACTAATATAGTCAAATTCAAAATCGAGGAAATCACG AAGGCAACAATGAATTTCTCTAGACATAATATTATTGGCAAAGGAGGTTATGGGAATGTTTACAAAGGGATGTTACCGGATGGATCTGAAGTTGCATTCA AGAGGTTCAAGAACTGTTCTGGTAGTGGCGATGCAACGTTTGCACTCGAAGTGGAAATCATAGCCAGTGTGAGGCATGTCAATCTTGTTGCTTTAAGAGG CTATTGCACCCAAAAAGTTCCTCCAGAAGCTCATCAAAGGATCATTGTGTGCGATTTGATGCATAATGGAAGTCTCTACAACCATCTTTTCGAATCAGGA AAAATGAAACTTAGCTGGCCGATTCGTCAGAAGATCGCCCTCGGAACCGCTCGGGGTTTGGCGTATTTACACTATGGGGTACATCCAGCAATCATCCACA GGGATATTAAAGCTAGCAATATACTTTTGGATGACAACTTCGAGGCAAAAGTTGCAGATTTTGGCCTTGCAAGGTTCAATTCACAGGGAATGACACATTT GAGCACAAGAGTTGCCGGGACTCTTGGTTACGTCGCCCCGGAGTATGCCTTGTATGGGACGTTAACCGAAAGAAGCGATGTCTACAGCTTCGGAGTTGTG CTTCTTGAGCTTCTGAGTGGAAAAAAGGCTTCTGAAAACAACGAGGGAAATGTTTCTCTTTTGACAGATTGGGCGTGGTCGCTAGCCAAGGAAGGCAGAG GATTGGACATCATCGAAGATAACCTGCCTGAGCTGGGGTTACCAGAAGTGATGGAACAATATGTGCACGTTGCTCTTATCTGTGCTCATCCTTTATTACA TGCTAGGCCAACAATGGATCAGATTGTGAATATGCTGGAAACTAACATGCCTGTTCCCTCAAACCCTGAACCATGCATTGCTGCCTCCATTATGGAAATT TGCAGTATCAGCTCAAGCTACAATTTCAGTTCTTCAGTCACACAATAG
AA sequence Show only first row Show all	>Potri.005G040200.1 pacid=42805121 polypeptide=Potri.005G040200.1.p locus=Potri.005G040200 ID=Potri.005G040200.1.v4.1 annot-version=v4.1 MFLFQFKVFQLVLLLALSEFCFQSANCWEISNRNLFEASCPLNYSVIRELVSKARPKHSFIDLPNQCQFVPDGIRFVRSEYLRTARSFVPPPDTFQTCWQ SYRNVISEVSDGLDIQSGCGYQAGWISKGCMNITSVAQFEIKFPESKLQEMKLYCNRSLDDDLACGSCTKKLLSLGDLYLRDPQPVNASDCSGYLSMYAA AIINRFGPTDPGTAKCLFRLKYSVKSTTNEHHKAVIAGIAAGSVFGVLGGFIAVCLRWKLHGKSDKEKISPDLEDASLDLGFGLHIRSTNIVKFKIEEIT KATMNFSRHNIIGKGGYGNVYKGMLPDGSEVAFKRFKNCSGSGDATFALEVEIIASVRHVNLVALRGYCTQKVPPEAHQRIIVCDLMHNGSLYNHLFESG KMKLSWPIRQKIALGTARGLAYLHYGVHPAIIHRDIKASNILLDDNFEAKVADFGLARFNSQGMTHLSTRVAGTLGYVAPEYALYGTLTERSDVYSFGVV LLELLSGKKASENNEGNVSLLTDWAWSLAKEGRGLDIIEDNLPELGLPEVMEQYVHVALICAHPLLHARPTMDQIVNMLETNMPVPSNPEPCIAASIMEI CSISSSYNFSSSVTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.005G040200 [exp]	0	1
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053200 [exp]	1.41	0.8716
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.007G093900 [exp]	1.41	0.8547
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	2.44	0.8372
					Potri.007G093850 [exp]	2.64	0.8284
AT1G23160			Auxin-responsive GH3 family pr...		Potri.014G136800 [exp]	4.47	0.8015
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.002G132900 [exp]	6.32	0.8305
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Potri.008G158300 [exp]	14.49	0.7002
					Potri.019G129700 [exp]	14.83	0.8351
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	16.97	0.7866
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.001G248700 [exp]	18.54	0.7454

Compare expression of checked genes

Potri.005G040200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.