Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54710 861 / 0 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT1G03380 736 / 0 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT5G54730 356 / 4e-109 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT2G40810 48 / 2e-05 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 48 / 3e-05 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT5G05150 48 / 3e-05 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT3G62770 44 / 0.0005 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028200 [exp] 1608 / 0 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.011G132700 [exp] 494 / 8e-160 AT5G54730 510 / 8e-169 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.001G417000 [exp] 488 / 1e-157 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.019G062800 [exp] 53 / 7e-07 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.014G132300 [exp] 46 / 0.0001 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 44 / 0.0005 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018960 [exp] 1126 / 0 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10002257 [exp] 976 / 0 AT1G54710 897 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10000925 [exp] 956 / 0 AT1G54710 878 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033817 [exp] 897 / 0 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10035835 [exp] 470 / 4e-152 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10036618 [exp] 470 / 1e-151 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10033818 [exp] 227 / 6e-67 AT1G54710 83 / 2e-17 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10003694 [exp] 48 / 3e-05 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10001580 [exp] 48 / 3e-05 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10029900 [exp] 46 / 0.0001 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12490 [poplar] [flax] BCAS3 Breast carcinoma amplified sequence 3
Representative CDS sequence Show only first row Show all	>Potri.005G040300.1 pacid=42803585 polypeptide=Potri.005G040300.1.p locus=Potri.005G040300 ID=Potri.005G040300.1.v4.1 annot-version=v4.1 ATGAAGAATAATAGCAACAAAGGAGAAAGTAATAGCAGCAGCAGTCACAATAACAGTAAAAACAACCGGTTTATTCCAAATTCTTTGAAATTCATTTCTT CTTGTATTAAAACCGCTTCTTCCGGTGTCCGGTCAGCCAGCGCTTCTGTTGCTGCTTCCGTCTCCGGTGACCACCACGACCACAAAGACCAGGTGCTCTG GGCCTCATTTGACAAACTAGAGCTTGGTCCTGGTTCCTTGAGGAACGTTCTTTTACTTGGGTACTCCAGTGGCTTTCAAGTCATTGATGTTGAAGATGCC TCTAACATCACGGAACTAGTGTCTAGACGTGATGATCCAGTTACGTTTTTACAGATGCAGCCCCTCCCTGCAAAGTCTGAGGGTTGCAAAGGAGAGGGAT ATAGGGCATCACATCCTTTGCTCTTGGTTGTTGCATGTGATGAATCAAAGAGCTCAGGTCCAATTCTCAGTGGGAGAGATGGATTTAATGAGCCTCATAT GGGAAATGTTGCCATCTCTCCGACTATTGTTCGGTTTTACTCGTTGAGGTCTCATAATTATGTTCATGTTCTGCGATTCCGTTCGACTGTCTATATGGTT AGAAGCAGTCAGCGGATCGTTGCTGTGGGTCTTGCAACACAAATATACTGCTTCGATGCCCTCACTTTTGAGAACAAATTCAGTGTTCTCACTTATCCTG TCCCTCAATTGGGAGGTCAAGGAATGGTTGGGGTTAATATCGGCTATGGTCCTATGGCTGTGGGTCCTAGGTGGTTAGCCTATGCTTCTGACAACCCACT GGTGTTAAATACAGGCCGCTTGAGTCCACAAAGTCTTACTCCTCTGGGTGTAAGTCCATCAAGTTCACCTGGCAGTGGGAGTCTGGTAGCTCGGTATGCC ATGGAATCTAGTAAGCAATTAGCTACTGGTTTAATAAATTTGGGAGACATGGGCTACAAAACTCTGTCTAGATATTGCCATGATCTTATGCCTGATGGTT CTAGTTCTCCTGTATCTTCAAACTCAAGCTGGAAAGTTGGTCGTGGGGCAACAAATTCAGCAGATACAGATACTGCTGGAATGGTAGTTGTGAAAGATTT TGTTTCCAGAGCTGTGATATCTCAATTTAGAGCTCATACTAGTCCAATTTCTGCTCTGTGTTTTGATCCAAGTGGTACACTTTTGGTCACTGCCTCTATT CATGGGAACAATATAAATATTTTTCGGATTATGCCATCCTGCTCTCAGAGTGGACAAGGCGCTAAGAATTATGATTGGAGCTCTTCTCATGTTCACCTTT ACAAGCTGCATCGTGGCATTACCCCCGCTATTATACAAGACATTTGCTTTAGTCATTACAGTCAGTGGATTGCCATTGTTTCATCCAGGGGAACTTGCCA TATTTTTGTGCTTTCCCCTTTTGGCGGTGAGAATGTTCTTCAAATACATAATTCCCATGTTGATGGGCCTGCTCTTTCTCCTGTTGTATCCTTACCATGG TGGTCCACTCCATCTTTCCTGGTAAACCAGCATTCTTTTTCTTCATCGCCGCCATCACCCGTTACCCTTTCTGTGGTGAGCAGAATTAAAAATAATAACT CTGGATGGCTCAACACAGTTAGCAATGCTACTTCTTCTGCAGCAGGAAAGGCTTCAATTCCATCTGGTGCTATAGCTGCTGTTTTTCATAGCTGTGTGCA CCAAGATTCGCAATCTGCTCACTTGAGAAAAGTTAACTCTTTGGAGCACCTAATGGTTTACACTCCTTGTGGTCATGTAGTTCAATATAAACTGCTGTCA TCAGTGGGTGGAGAGCCAAGCGAAATTGCTTCAAGAAATGGGCCAGCTTCTTCAGTGCACATGCAAGATGAGGAATTAAGAGTGAATGTTGAATCCATCC AATGGTGGGATGTTTGCCGAAGAGCAGATTGGCCTGAAAGGGAGGAATGCATTTCTGGAATCACTCATAGAGGACAAGAAACTAAAGAGACAGTCATGGA CACGTCTGATGGTGAAGATGATGGTATTGCGCATTCACAATTGGTGATGTCCCACGAACCATCTCATTGGTATCTCTCCAATGCAGAGGTGCAGATGAGC TTTTGGAGAATACCACTTTGGCAGAAATCTAAGATGTATTTCTATGCAATGAGTCATCTGGGGCCTAAAGAAGAGAACATCAGTGAAGATCAAACTGGTC AAGAGATTGAAATAGAGAAGGTTCCTGTTCATGAGGTTGAGATTAGGCGGAAGGACCTGCTGCCTGTTTTTGACCATTTTCACAGGTCTCCTGAATGGAG CGAACGGGGTCTTGGAGATGTAAGATACTCATCTTCATCTTCTGAATCTCGTGGAGTCAAAGAGTCTGAAGATGCTGTTATTTCTCACTCTGAGTTGGTC TCACCTGATTCAGCTCCAAGTTCAGATGGTGGATCATCAACAAAATTTTATCCCTCCATGCTGCAAGCTGCTAATTCTAACGCTGGTGAAGGAGGGATTT CTATGTTGGCATCACCCATCCTGTATGAAAGCTCTATTAACAAAGATATATGTTCAGTTTCATTCAAACAAGCTCAAATAGATGCTTCTCCTGCTGAGAA TAGTAATTTTGTCAATAGTAATGTAACATCTTTAACAAATGATCCACATACTGCTGGAAGAATGATTGCAAAAGAAGTTCAGTCATCAGAAAGTGGTTTC ACCAGTGAAGCTTCAAACTTAAGTTCCATTCGATCGGATTTGAGCATGAACATCATAGATGAGGGACCAGCAAATTATTCCCCAGATTTTGAGCTGTTTT TTCAAGAGGGTTACTGTAAAGTGTCAGAATTGAATGAATGTCAAGAATCAACTGAAGTTCTTACTTTTGTGGACAACAGCAGCAGTCCTTGTGATGTAGA TAAATCTGAGGAAGATGGTGACAATGACGACATGCTTGGAGGTGTTTTTTCTTTCTCCGAAGAAGGTTGA
AA sequence Show only first row Show all	>Potri.005G040300.1 pacid=42803585 polypeptide=Potri.005G040300.1.p locus=Potri.005G040300 ID=Potri.005G040300.1.v4.1 annot-version=v4.1 MKNNSNKGESNSSSSHNNSKNNRFIPNSLKFISSCIKTASSGVRSASASVAASVSGDHHDHKDQVLWASFDKLELGPGSLRNVLLLGYSSGFQVIDVEDA SNITELVSRRDDPVTFLQMQPLPAKSEGCKGEGYRASHPLLLVVACDESKSSGPILSGRDGFNEPHMGNVAISPTIVRFYSLRSHNYVHVLRFRSTVYMV RSSQRIVAVGLATQIYCFDALTFENKFSVLTYPVPQLGGQGMVGVNIGYGPMAVGPRWLAYASDNPLVLNTGRLSPQSLTPLGVSPSSSPGSGSLVARYA MESSKQLATGLINLGDMGYKTLSRYCHDLMPDGSSSPVSSNSSWKVGRGATNSADTDTAGMVVVKDFVSRAVISQFRAHTSPISALCFDPSGTLLVTASI HGNNINIFRIMPSCSQSGQGAKNYDWSSSHVHLYKLHRGITPAIIQDICFSHYSQWIAIVSSRGTCHIFVLSPFGGENVLQIHNSHVDGPALSPVVSLPW WSTPSFLVNQHSFSSSPPSPVTLSVVSRIKNNNSGWLNTVSNATSSAAGKASIPSGAIAAVFHSCVHQDSQSAHLRKVNSLEHLMVYTPCGHVVQYKLLS SVGGEPSEIASRNGPASSVHMQDEELRVNVESIQWWDVCRRADWPEREECISGITHRGQETKETVMDTSDGEDDGIAHSQLVMSHEPSHWYLSNAEVQMS FWRIPLWQKSKMYFYAMSHLGPKEENISEDQTGQEIEIEKVPVHEVEIRRKDLLPVFDHFHRSPEWSERGLGDVRYSSSSSESRGVKESEDAVISHSELV SPDSAPSSDGGSSTKFYPSMLQAANSNAGEGGISMLASPILYESSINKDICSVSFKQAQIDASPAENSNFVNSNVTSLTNDPHTAGRMIAKEVQSSESGF TSEASNLSSIRSDLSMNIIDEGPANYSPDFELFFQEGYCKVSELNECQESTEVLTFVDNSSSPCDVDKSEEDGDNDDMLGGVFSFSEEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	1.00	0.9105
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Potri.014G114300 [exp]	1.41	0.8139
AT5G24870			RING/U-box superfamily protein...		Potri.018G005600 [exp]	2.44	0.8106
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Potri.001G470300 [exp]	5.29	0.7989
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.013G012300 [exp]	6.70	0.7196
AT3G53690			RING/U-box superfamily protein...		Potri.013G120300 [exp]	7.41	0.7988
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	10.00	0.7619
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Potri.016G118000 [exp]	10.81	0.7583
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.017G032000 [exp]	10.90	0.7505
AT4G32090			Beta-1,3-N-Acetylglucosaminylt...		Potri.009G129400 [exp]	11.83	0.7421

Compare expression of checked genes

Potri.005G040300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.