Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27330 248 / 2e-73 Prefoldin chaperone subunit family protein (.1) AT3G05130 247 / 3e-73 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028600 [exp] 722 / 0 AT5G27330 289 / 6e-89 Prefoldin chaperone subunit family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002255 [exp] 113 / 5e-26 AT3G05130 156 / 2e-40 unknown protein Lus10000927 [exp] 108 / 1e-24 AT3G05130 150 / 1e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G040500.1 pacid=42805152 polypeptide=Potri.005G040500.1.p locus=Potri.005G040500 ID=Potri.005G040500.1.v4.1 annot-version=v4.1 ATGGCCAAAAAGAAAGTGATCCATCAAACCCAAGACCCCGAACAACAAAACCCACGGGATCAAAATCAAAACTTGACCACCCAACATCAACACCAGCAAC CCTCCATGGAAGACCCTGATGACAAGTTTCAATCTTTGAAAACTGTCAATGATTTGCTTGTCAAGGAGGCAAAACAACGCAGACAACAAGTTGAATCTCT GGTGAAAGCTAAGGAGGCTTTGGAGACTGAGCTGGCTCTGTATTGTAAGGAAAAGAGTGAGTTGGAGAGTGAGTTGGGTAAAATCAGTGATGGGAGGGTG AGTTTGGAGATAGAAAAGGCGCTATTTTGTGTTTTTATCGAGACCCGGATGGTTGAAATGGGTAGTTTTGTTGATGGTCTGGTGAGAGAGAAGAGAGGGA AGGACAATGAAATTGGGGCCTTGGAGAGTGAGGTTAAGGGGTTAGTGATGAATGTTGAGACTGAGAGAGATAGATTGAGTCGGGTTTATCGCGAGAGGGA TTTGTTGAAGAGTGATGTTGATAATTGGATGAAGGGGGCTGATGGTTTGAAAGATAGTGTGGTTGAATTGGAGAAAATGGAGAGGGAGGGTGAGGAAGAG ATTGAGAAACTTTATAAACAATATGCTTTGTTGGATAAGGAAATGAAGGACGGAGAGAAAGAAATTGAGGAGCTTCAAAGATTGAGAGGTTTGGCTGAAA ATAATTTGGTGGAGAAAGTGAATGAAATTGAGGATTTGAAGAGAGAGATTGGACGGATTGAGAAGGAAAGGAACGAGATTGCTGGTGAAAAAAGTGAGCA GAAGGTGAAGATTGGTGAGTTGGAGAGAAAAGCAGGGGAACTTGATGAGATTGTATCAAGTTTGCAGAAGGAGAAGGGAGTTTTGAGCGGAAAAGCTATG GAATTGGAGAAGAGTTTGGGGCTGGCATTGGAGAAGGAGAATGCAATGGTAAGGGAAATTGATGGTTTGATGGAAGAGAAGAAGGAAAAAGAAAGGACAA TTGTGCGTTTAATGGAGGAAAAGGATGATGACTGTAAATATAAGATCATGGCTTATGCTGAAATTGAGGATAAGAAAGGATTAATTGAGGAATTGTTGAG AGAGAAGAATGAGATTGAGGAAGTGAAAGTTATTAAGGAGGGTGAAATTGTGAAGCTGCACGAGGAGGTGGGTCAGCTAAGGGGTGATATTTTTTCAATG CAAGAATCGATCAAGGATCGAGAAGATAAGAACAAACAAGTAGTTTCTGAAGCCAGTCATTATAAAGATGCTTTTGAGAAAGTAAGGCTTGAGAGGGACA CTGCTCAAAAAAGTTTAGGTGAGGAGAGAAAGAACGCCATGAACTTGAGGTCTAAAGTTTTGGAAATGGAGAAGAGAGTTGAAGAAACTGTGGAGGAGCG TGCAAAGATGAAAAACGAGCATGAGAGTCTGGTCTCGCAAAAGAAGGAAATGGAAAGCCAAGTTGCTACGTTGGAGAAGGAAAAAGATTTGTTACAGAAG CATTTCACAGAAGCAGAAAGGAAAATAGATGAGTTGAGGACCAAAATAGAATCAGCTGGTACTAATTATGATAGAGCACTAGCCATGCTAAAGAATACTG CTGCATTGTTATGTGAATCAAACAATGTTAAAGAAGATATGATTGTCACTGAAAAGATGCTTAATGGTGAAATCGAACCGTATGCAAGTAAGCTGGAAGT TATTAAGACTGCATTTAGTAACAAGCAGACAGTGGTGGAGGAGATGAAGCAACAATTAGAATTTCTGCAGAATTCTGTGGCAAAGGCGGATAAGAAGAAT AGCCTTTTAAGTCTGTTGTCTTCAGCAACTGCAGTTGTTGCTGCAGCAGTGTCTCTTGCATATGTTGCTAGATTACGTTGA
AA sequence Show only first row Show all	>Potri.005G040500.1 pacid=42805152 polypeptide=Potri.005G040500.1.p locus=Potri.005G040500 ID=Potri.005G040500.1.v4.1 annot-version=v4.1 MAKKKVIHQTQDPEQQNPRDQNQNLTTQHQHQQPSMEDPDDKFQSLKTVNDLLVKEAKQRRQQVESLVKAKEALETELALYCKEKSELESELGKISDGRV SLEIEKALFCVFIETRMVEMGSFVDGLVREKRGKDNEIGALESEVKGLVMNVETERDRLSRVYRERDLLKSDVDNWMKGADGLKDSVVELEKMEREGEEE IEKLYKQYALLDKEMKDGEKEIEELQRLRGLAENNLVEKVNEIEDLKREIGRIEKERNEIAGEKSEQKVKIGELERKAGELDEIVSSLQKEKGVLSGKAM ELEKSLGLALEKENAMVREIDGLMEEKKEKERTIVRLMEEKDDDCKYKIMAYAEIEDKKGLIEELLREKNEIEEVKVIKEGEIVKLHEEVGQLRGDIFSM QESIKDREDKNKQVVSEASHYKDAFEKVRLERDTAQKSLGEERKNAMNLRSKVLEMEKRVEETVEERAKMKNEHESLVSQKKEMESQVATLEKEKDLLQK HFTEAERKIDELRTKIESAGTNYDRALAMLKNTAALLCESNNVKEDMIVTEKMLNGEIEPYASKLEVIKTAFSNKQTVVEEMKQQLEFLQNSVAKADKKN SLLSLLSSATAVVAAAVSLAYVARLR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27330			Prefoldin chaperone subunit fa...		Potri.005G040500 [exp]	0	1
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	1.73	0.8793
AT5G30490			unknown protein		Potri.010G151300 [exp]	4.00	0.7953
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	4.58	0.8053
AT4G25390			Protein kinase superfamily pro...		Potri.015G134100 [exp]	11.18	0.7653
AT1G61040		VIP5	vernalization independence 5, ...		Potri.011G047900 [exp]	13.26	0.7385
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	13.34	0.8431
AT5G45790			Ubiquitin carboxyl-terminal hy...		Potri.016G030300 [exp]	16.24	0.7612
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	16.24	0.7500
AT1G13940			Plant protein of unknown funct...		Potri.010G162000 [exp]	23.36	0.7606
AT3G61800			unknown protein		Potri.002G171600 [exp]	26.68	0.7573

Compare expression of checked genes

Potri.005G040500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.