Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27320 571 / 0 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 555 / 0 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 492 / 4e-176 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 191 / 4e-58 ATCXE18 carboxyesterase 18 (.1) AT5G06570 135 / 5e-37 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G16080 135 / 6e-37 ATCXE17 carboxyesterase 17 (.1) AT1G68620 130 / 5e-35 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 127 / 1e-33 ATCXE20 carboxyesterase 20 (.1) AT1G47480 123 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1) AT5G14310 120 / 1e-30 ATCXE16 carboxyesterase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G028700 [exp] 627 / 0 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G213100 [exp] 536 / 0 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 525 / 0 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.019G014302 [exp] 232 / 5e-74 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.001G459400 [exp] 221 / 1e-69 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.004G092500 [exp] 212 / 4e-66 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.017G113700 [exp] 150 / 2e-42 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.004G101400 [exp] 148 / 1e-41 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.001G032400 [exp] 143 / 8e-40 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000928 [exp] 542 / 0 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 536 / 0 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10027969 [exp] 499 / 8e-179 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10018963 [exp] 356 / 2e-123 AT5G27320 365 / 3e-127 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10039162 [exp] 206 / 1e-63 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10008189 [exp] 191 / 5e-61 AT3G63010 206 / 4e-67 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10013774 [exp] 197 / 4e-60 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10036168 [exp] 152 / 4e-43 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 150 / 2e-42 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 157 / 3e-42 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07859 [poplar] [flax] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.005G040600.1 pacid=42805485 polypeptide=Potri.005G040600.1.p locus=Potri.005G040600 ID=Potri.005G040600.1.v4.1 annot-version=v4.1 ATGGCTGGAAGTAATGGAGTTAATCTCAATGAAAGCAAGAGGGTGGTACCCCTGAATACATGGGTCCTCATATCAAATTTCAAGCTGGCTTACAATCTTC TTCGTCGTCCTGATGGGACTTTCAACCGCCACTTGGCTGAGTTCCTTGACCGGAAAGTTCCTGCTAACGCGAATCCAGTTGATGGGGTTTTCTCATTTGA TGTTATCATTGACCGTGGGACTAGCCTTCTTAGCCGAATCTATAGACGAGCTGATGCGCAAGAATCACAACCAAATATTGTTGACCTTGAGAAGCCTGTC AACTCGGAGGTTGTCCCTGTCATAATCTTCTTTCATGGCGGAAGCTTTGCTCACTCTTCTTCAAACAGTGCTATATATGATACACTCTGTCGCCGCCTGG TGGGCCTTTGCAAGGCTGTGGTAGTGTCTGTGAATTATAGGCGTGCACCTGAAAATCGATACCCATGTGCTTATGATGATGGATGGACTGCTCTGAAGTG GGTTAATTCAAGAACATGGCTCCAGAGCAAGAAAGATTCTAAAGTTCATATATACTTGGCTGGGGATAGTTCTGGTGGTAACATTGTTCACCATGTTGCT TTAAGAGCAGTAGAATCGGGAATTGATGTTTTGGGAAACATACTGCTGAACCCAATGTTTGGTGGGCAAGAGAGAACAGAATCAGAGAAGCGATTAGATG GCAAATATTTTGTTACTCTCCAAGACCGAGACTGGTATTGGAGAGCATTTCTTCCTGAAAGAGAGGATAGGGACCATCCAGCATGTAATCCATTTGGTCC AAAAGGTAAAAGCCTCGAAGGAATTAAATTTCCTAAGAGTCTTGTTGTGGTGGCCGGTTTAGACCTTGTTCACGACCGGCAAATAACATATGCTGAAGGT CTCAAGAAGGCTGGTCAAGATGTGAAACTTCTGTATCTGGAGCAGGCAACAATAGGTTTCTACTTGTTGCCCAATAACAATTACTTCCATACAGTGATGG ATGAGATAAGTGAATTCGTGAGTCCTAACTGTTAA
AA sequence Show only first row Show all	>Potri.005G040600.1 pacid=42805485 polypeptide=Potri.005G040600.1.p locus=Potri.005G040600 ID=Potri.005G040600.1.v4.1 annot-version=v4.1 MAGSNGVNLNESKRVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANPVDGVFSFDVIIDRGTSLLSRIYRRADAQESQPNIVDLEKPV NSEVVPVIIFFHGGSFAHSSSNSAIYDTLCRRLVGLCKAVVVSVNYRRAPENRYPCAYDDGWTALKWVNSRTWLQSKKDSKVHIYLAGDSSGGNIVHHVA LRAVESGIDVLGNILLNPMFGGQERTESEKRLDGKYFVTLQDRDWYWRAFLPEREDRDHPACNPFGPKGKSLEGIKFPKSLVVVAGLDLVHDRQITYAEG LKKAGQDVKLLYLEQATIGFYLLPNNNYFHTVMDEISEFVSPNC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.005G040600 [exp]	0	1
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.014G164300 [exp]	4.24	0.8938
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.001G256100 [exp]	8.42	0.9061
AT3G05970		LACS6, ATLACS6	long-chain acyl-CoA synthetase...		Potri.010G090200 [exp]	9.74	0.8908	Pt-LACS6.1
AT3G22750			Protein kinase superfamily pro...		Potri.005G213200 [exp]	9.94	0.8852
AT3G07565			Protein of unknown function (D...		Potri.014G197300 [exp]	10.95	0.8943
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.006G259400 [exp]	16.73	0.8751
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.008G011300 [exp]	17.60	0.8625	CMEIL2.2,EIN3D
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	19.77	0.8693
AT3G54000			unknown protein		Potri.006G093000 [exp]	20.39	0.8650
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.016G069700 [exp]	20.49	0.8632	Pt-BLH1.2

Compare expression of checked genes

Potri.005G040600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.