Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04970 520 / 0 DHHC-type zinc finger family protein (.1.2) AT2G14255 85 / 8e-18 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G26935 80 / 3e-16 DHHC-type zinc finger family protein (.1) AT3G48760 79 / 1e-15 DHHC-type zinc finger family protein (.1) AT4G00840 76 / 2e-15 DHHC-type zinc finger family protein (.1) AT5G50020 77 / 3e-15 DHHC-type zinc finger family protein (.1.2) AT5G41060 77 / 3e-15 DHHC-type zinc finger family protein (.1.2) AT4G24630 75 / 1e-14 DHHC-type zinc finger family protein (.1) AT5G20350 75 / 2e-14 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT3G56930 74 / 2e-14 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061800 [exp] 83 / 5e-17 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.018G121200 [exp] 83 / 6e-17 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.001G325400 [exp] 80 / 3e-16 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G287000 [exp] 80 / 5e-16 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.003G160600 [exp] 79 / 8e-16 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 79 / 1e-15 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.015G101900 [exp] 79 / 1e-15 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 78 / 2e-15 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 77 / 2e-15 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004149 [exp] 517 / 0 AT3G04970 516 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10018967 [exp] 432 / 3e-151 AT3G04970 437 / 3e-153 DHHC-type zinc finger family protein (.1.2) Lus10033823 [exp] 186 / 2e-56 AT3G04970 199 / 1e-62 DHHC-type zinc finger family protein (.1.2) Lus10012455 [exp] 90 / 2e-19 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10038108 [exp] 83 / 4e-17 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10008037 [exp] 81 / 5e-16 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10012096 [exp] 79 / 1e-15 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10028737 [exp] 79 / 1e-15 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 79 / 1e-15 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10010447 [exp] 78 / 2e-15 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G041000.7 pacid=42804911 polypeptide=Potri.005G041000.7.p locus=Potri.005G041000 ID=Potri.005G041000.7.v4.1 annot-version=v4.1 ATGGCGTTGAATTGGCTGCTAATATGTCACGGATTAGTCACTTTAACAGTCATAATCTCCTTCCTCTGTGGTCAATGGCCAATCTTCCAAGGCACCCCAA TTGAACGCCTTCATCACTTCATCACTTTCGGCGCTTACGATTACTTCCTGAGGTTTGTTGGGTTTGTGTTTGGTGATAAGGCGAGGAGTTTGGTGCTCTC TATTGAACGCTGTTGCTGTGATCGGCCTAATCCTGTTATGCAGGTTATATACTTGGCAATAATTGGAGCAACTTATTATTATATTGTGAAGTCATCCTTT CGCTATATTCCTGGATATTACTTAGGTGAAGTTCACAAATACACAAGCTTGCTGGCAGTTGGTATCGGAATTGTACTCTTTTTATTGACTAGCTTTTCTG ATCCTGGAACTGTCAAGGCTGGGAATGTTTCAGAATATCTCTTGGCATATCCCTATGACAATATCATATATACAGAGAAAGAATGTTCTACTTGTAAAAT CCCAAAACCAGCTAGGTCCAAGCACTGCAGCATATGTAATCGGTGTGTTGCCCGGTTTGACCATCATTGTGGTTGGATGAATAATTGTATAGGGGAGAGA AATACCCGATACTTCTTGGCTTTTCTTTTGTGGCATTGCCTTCTATGTATATATGGAGCAATTGCACTTGCATTGATTATTGCTGGACGATTGAAAGAAT TAAGAGTTGTATATATTCTAACAGTTTATTATGGCGTTGGAAATTCATTCCGTAGTTTAGCTCCGCATGTTGCACAGTGGCTGTTGAGCTCATACAACAC TCAATTACTTCTGATGGTGTTTCTTGTCATAGTTTCTCTATTGTTGGCTGGATTTTTTGGGTACCATGCCAACCTTTGTCTCACAAACACTACAACAAAT GAGACCTTCAAGTGGGAAGACTACATAAGCTGGCAAAGGAAGCTAAATGAAGCAAGGGTTAGCGCTGCAGCACTTAAAGCAAGCATCAGTGGGATGAGCA GTGAAGCAAAGCGTCCAGAGAGCAAATGTAAATCCTTTTTCCGGAGATCGTCCCTCGAAGATTCTCAGGTGGTAGCAAAGGAAAACAAGTATGACAAGGG GTTCTTTCACAACATGTTTGAGGTCCTTTTCCCGCTATCAACGAGACCATCATTTTCGCAAACGAAATCAAAGCCTTCTTGA
AA sequence Show only first row Show all	>Potri.005G041000.7 pacid=42804911 polypeptide=Potri.005G041000.7.p locus=Potri.005G041000 ID=Potri.005G041000.7.v4.1 annot-version=v4.1 MALNWLLICHGLVTLTVIISFLCGQWPIFQGTPIERLHHFITFGAYDYFLRFVGFVFGDKARSLVLSIERCCCDRPNPVMQVIYLAIIGATYYYIVKSSF RYIPGYYLGEVHKYTSLLAVGIGIVLFLLTSFSDPGTVKAGNVSEYLLAYPYDNIIYTEKECSTCKIPKPARSKHCSICNRCVARFDHHCGWMNNCIGER NTRYFLAFLLWHCLLCIYGAIALALIIAGRLKELRVVYILTVYYGVGNSFRSLAPHVAQWLLSSYNTQLLLMVFLVIVSLLLAGFFGYHANLCLTNTTTN ETFKWEDYISWQRKLNEARVSAAALKASISGMSSEAKRPESKCKSFFRRSSLEDSQVVAKENKYDKGFFHNMFEVLFPLSTRPSFSQTKSKPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04970			DHHC-type zinc finger family p...		Potri.005G041000 [exp]	0	1
AT1G42480			unknown protein		Potri.002G007601 [exp]	15.09	0.7229
					Potri.005G123600 [exp]	16.37	0.7460
AT5G57700			BNR/Asp-box repeat family prot...		Potri.006G175161 [exp]	29.29	0.7257
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Potri.008G109833 [exp]	31.11	0.7095
AT4G16180			unknown protein		Potri.008G104100 [exp]	34.64	0.7173
AT3G09470			Major facilitator superfamily ...		Potri.006G083700 [exp]	34.74	0.6394
AT4G15563			unknown protein		Potri.008G204800 [exp]	37.94	0.7127
					Potri.003G152701 [exp]	43.15	0.7115
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Potri.014G128600 [exp]	45.91	0.6434	ATMHX.1
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Potri.008G157500 [exp]	47.15	0.6821

Compare expression of checked genes

Potri.005G041000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.