Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32910 197 / 6e-55 DCD (Development and Cell Death) domain protein (.1) AT5G61910 119 / 6e-28 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT2G35140 73 / 2e-13 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT5G01660 71 / 1e-12 unknown protein AT3G11000 71 / 1e-12 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT5G42050 67 / 6e-12 DCD (Development and Cell Death) domain protein (.1) AT3G27090 52 / 3e-07 DCD (Development and Cell Death) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043100 [exp] 1068 / 0 AT2G32910 201 / 6e-56 DCD (Development and Cell Death) domain protein (.1) Potri.013G029200 [exp] 768 / 0 AT2G32910 187 / 3e-51 DCD (Development and Cell Death) domain protein (.1) Potri.001G136300 [exp] 125 / 3e-31 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.015G122300 [exp] 73 / 4e-13 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.016G127600 [exp] 71 / 1e-12 AT5G01660 628 / 0.0 unknown protein Potri.008G074200 [exp] 65 / 1e-10 AT5G01660 488 / 2e-164 unknown protein Potri.001G088800 [exp] 60 / 3e-09 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.003G141900 [exp] 60 / 3e-09 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.017G069100 [exp] 53 / 3e-07 AT3G27090 426 / 1e-151 DCD (Development and Cell Death) domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004128 [exp] 262 / 1e-76 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10001728 [exp] 221 / 3e-63 AT2G32910 208 / 1e-57 DCD (Development and Cell Death) domain protein (.1) Lus10032534 [exp] 115 / 4e-27 AT5G61910 169 / 3e-45 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10017137 [exp] 74 / 2e-13 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018316 [exp] 73 / 3e-13 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Lus10012220 [exp] 64 / 2e-10 AT5G01660 224 / 1e-66 unknown protein Lus10023059 [exp] 62 / 5e-10 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10032412 [exp] 61 / 7e-10 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10041557 [exp] 56 / 5e-08 AT3G27090 428 / 2e-152 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 55 / 5e-08 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10539 [poplar] [flax] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Potri.005G042700.3 pacid=42803798 polypeptide=Potri.005G042700.3.p locus=Potri.005G042700 ID=Potri.005G042700.3.v4.1 annot-version=v4.1 ATGGAAACTGAGAATCCTATTGAAGCATCGACTAAGTTACAATCTGAAATAAACAACAATGGAGATGGAAATCTTGTGGATGCATTAACTAAAGGTCAAT CATCCAGAAAAAGAACCCCCAAATCATTGAGGGCCAAATCTAAAATCATAGAGAAACCTTCAGCTAACAATTCTTTGAAGTCCAAGAAAGCTAAAAGCAG TCCAAAATCTCAAGGAAGAAACAGAAAGAAGAATAAAGATATTATACAAGGCAAGGGAGAAAGAAACAGAAATGCGCATGGTGATGCCGATAACCTGAAT TCGAGTGAAAAGAATGTTTCTAAGAAAGAGCGCATTGAGAATGGCCAAGAGATTCGAAAGAACCAAGAAAGATTTGTTGGGTCAAATAAGGGTCAAAGGA ACCAAAAGAGTGGAGAAAAGCATGGTGTCTTAGTTGACAGAAGCTCGAGAAATCAAAAAAACAAAGGAAAACATGATGAGAGAGAAAAGAATGGATGGGA TGAGAAGAAGAAAGAAAAGCTTGGTGGTATGATCTTTATGTGCAGTGCAAAAACCAAGCCAGATTGTTTCCTCTATCGTGTCATGGGTGTCACAATGAAT AAAAAGGAACTCATATTGGGTGTGAAACCTGGACTTAAGCTTTTCCTCTATGATTTTGATCTGAAACTTATGTATGGTATCTATGAAGCATCCTCTGCTG GTGGAGTAAAATTGGAGCCCAAGGCTTTTGGTGGTTCCTTCCCATTTCAGGTGCGGTTTGTTGTTCACAAGGACTGTTTTCCAATCACTGAGAGTGTTTT CAAGAAGGCTATAAAGGACAATTATAATGAGAAGAACAAGTTCAAAACAGAACTTACTGTTCGACAGGTCCTGAAACTCAGTGCACTTTTCCGCCCAGTT ATAGGGCCTGTACGCTCGCCACCAATGGTGACTGTTCAGGACAGAGAAGTTTATGCGGGAGCAAGAGACTTGCAGGTCCATTTGGAAAGGGAAGCATTTG CTAGAGGCAATCATGATGCTAGGAGATACTCTATGCTCTCTGATGAAAGGGATGGACATGTTGAATACCAGCAGGCGGGCTCTATGCACAGAGATGAGTT TCCTTGTGATTTATTCATGAGTGAAAAGGAATATAGAACGTATGGCCTTTCAGGAGAGAGAAGAAAGTTGACTCCCTCTCATCATATTCCATCCACTCTA GACCCGTACCAGAGAGACCAGGAAAGAGAGCACCTTCTTAGACTGCCAGACCCTATATACAGAGACACTGTACCTTTGCAAAGAGAAGCCGTTCTGGCTG TTCCTCTCTACCTGAACCAGCCATATAATTCTAGCGGTAGACGTGAATTGCCACCAGCCGTTACTTCGATACCTCCAACTTCTTCTGGCTCTGCTCTTGC TGCTTTGGACCCATACACAAGGGATCCATATTATACTTATCATCATGGTGCTTCATCTGCAGATGCATATGTGCCGCCTTCAAGGAGAGATGAACTTTCT TCAGGTTCCTATTATGTTGATGGTCGTAGAGAGACGTCCCTATTTGAGGCAGATCCCTTGCGTAGGAGGGAAGCTGATCAAGAGGGTAGATTATACTCAA CGCATGCTTCTGATGCATTGTCAAATTATAACAAGTTACTCCAGTACCACGGAGCCAAGCCTGAAACTGCACCTCCATCAGTTTCATCTCGGTACTCCTT TGCTGGGTCATCTGTCTACTATCGCTAA
AA sequence Show only first row Show all	>Potri.005G042700.3 pacid=42803798 polypeptide=Potri.005G042700.3.p locus=Potri.005G042700 ID=Potri.005G042700.3.v4.1 annot-version=v4.1 METENPIEASTKLQSEINNNGDGNLVDALTKGQSSRKRTPKSLRAKSKIIEKPSANNSLKSKKAKSSPKSQGRNRKKNKDIIQGKGERNRNAHGDADNLN SSEKNVSKKERIENGQEIRKNQERFVGSNKGQRNQKSGEKHGVLVDRSSRNQKNKGKHDEREKNGWDEKKKEKLGGMIFMCSAKTKPDCFLYRVMGVTMN KKELILGVKPGLKLFLYDFDLKLMYGIYEASSAGGVKLEPKAFGGSFPFQVRFVVHKDCFPITESVFKKAIKDNYNEKNKFKTELTVRQVLKLSALFRPV IGPVRSPPMVTVQDREVYAGARDLQVHLEREAFARGNHDARRYSMLSDERDGHVEYQQAGSMHRDEFPCDLFMSEKEYRTYGLSGERRKLTPSHHIPSTL DPYQRDQEREHLLRLPDPIYRDTVPLQREAVLAVPLYLNQPYNSSGRRELPPAVTSIPPTSSGSALAALDPYTRDPYYTYHHGASSADAYVPPSRRDELS SGSYYVDGRRETSLFEADPLRRREADQEGRLYSTHASDALSNYNKLLQYHGAKPETAPPSVSSRYSFAGSSVYYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32910			DCD (Development and Cell Deat...		Potri.005G042700 [exp]	0	1
AT1G27300			unknown protein		Potri.001G057700 [exp]	2.00	0.9064
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G224075 [exp]	8.00	0.8559
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	12.00	0.8621
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	15.29	0.7832	ATHMG.2
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.002G209795 [exp]	15.90	0.8509
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004232 [exp]	16.00	0.8769
AT2G18460		LCV3	like COV 3 (.1)		Potri.005G124100 [exp]	19.77	0.8554
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	20.19	0.7754
AT5G05800			unknown protein		Potri.008G205550 [exp]	23.08	0.8619
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.003G019100 [exp]	23.32	0.8044

Compare expression of checked genes

Potri.005G042700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.