Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32910 199 / 2e-55 DCD (Development and Cell Death) domain protein (.1) AT5G61910 118 / 1e-27 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT2G35140 73 / 3e-13 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT5G01660 71 / 9e-13 unknown protein AT3G11000 69 / 5e-12 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT5G42050 67 / 7e-12 DCD (Development and Cell Death) domain protein (.1) AT3G27090 53 / 3e-07 DCD (Development and Cell Death) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G042700 [exp] 1039 / 0 AT2G32910 198 / 3e-55 DCD (Development and Cell Death) domain protein (.1) Potri.013G029200 [exp] 786 / 0 AT2G32910 187 / 3e-51 DCD (Development and Cell Death) domain protein (.1) Potri.001G136300 [exp] 124 / 8e-31 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.015G122300 [exp] 73 / 5e-13 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.016G127600 [exp] 71 / 9e-13 AT5G01660 628 / 0.0 unknown protein Potri.008G074200 [exp] 65 / 1e-10 AT5G01660 488 / 2e-164 unknown protein Potri.003G141900 [exp] 59 / 4e-09 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.001G088800 [exp] 59 / 4e-09 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.017G069100 [exp] 53 / 3e-07 AT3G27090 426 / 1e-151 DCD (Development and Cell Death) domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004128 [exp] 259 / 4e-75 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10001728 [exp] 212 / 8e-60 AT2G32910 208 / 1e-57 DCD (Development and Cell Death) domain protein (.1) Lus10032534 [exp] 115 / 4e-27 AT5G61910 169 / 3e-45 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Lus10018316 [exp] 73 / 3e-13 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Lus10017137 [exp] 73 / 5e-13 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10012220 [exp] 64 / 2e-10 AT5G01660 224 / 1e-66 unknown protein Lus10023059 [exp] 61 / 1e-09 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10032412 [exp] 61 / 1e-09 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 56 / 5e-08 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1) Lus10041557 [exp] 56 / 5e-08 AT3G27090 428 / 2e-152 DCD (Development and Cell Death) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10539 [poplar] [flax] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Potri.005G043100.2 pacid=42803330 polypeptide=Potri.005G043100.2.p locus=Potri.005G043100 ID=Potri.005G043100.2.v4.1 annot-version=v4.1 ATGGAACAAGAGATTAATGATACAGAAACTGAGCTGGCTGAAGCCTCCACAAAATCGCAGTCAACTGAGAATAACAATATGGAAACTGAGAATCCTATTG AAGCATCGACTAAGTTACAATCTGAAATAAACAACAATGGGGATGGAAATCACGTGGATGCATTAACTAAAGGTCAATCATCCAGAAGAAGAACCCCCAA ATCATTGAGGGCCAAATCTAAAACCATAGAGAAACCTTCAGCTAACAATTCTTTGAAGTCCAAGAAAGCTAAAAGCAGTCCAAAATCTCAAGGAAGAAAC AGAAAGAAGAATAAAGATATCATCCAAGGCAAGGGAGAAAGAAACAGAAATGAGCATGGTGAAGCTAATAACCTGAATTCGAGTGAAAAGAATGTTTCTA AGAAAGAGCGCATTGAGAAAGGCCAAGAGATTCGAAAGAACCAAGAAAGATTTGTTGGGTCAAATAAGGGTCAAAAGAACCAAAAGAGTGGAGAAAAGCA TGGTGTCTTGGTTGACAAAAGCTCGAGGAATAAAAAAAACAAAGGAAAACTTGATGAGAAAGAAAAGAATGGATGGGATGAGAAGAAGAAAGAAAAGCTT GGTGGTATGATCTTTATGTGCAGTGCAAAAACCAAGCCAGATTGTTTCCTCTATCGTGTCATGGGTGTCACAATGAATAAAAAGGAACTCATATTGGGTG TGAAACCTGGACTTAAGCTTTTCCTCTATGATTTTGATCTGAAACTTATGTATGGTATCTATGAAGCATCCTCTGCTGGTGGAGTAAAATTGGAGCCCAA GGCTTTTGGTGGTTCCTTCCCATTTCAGGTGCGGTTTGTTGTTCACAAGGACTGTTTTCCAATCACTGAGAGTGTTTTCAAGAAGGCTATAAAGGACAAT TATAATGAGAAGAACAAGTTCAAAACAGAACTTACTGTTCGACAGGTCCTGAAACTCAGTGCACTTTTCCGCCCAGTTATAGGGCCTGTACGCTCGCCAC CAATGGCTACTGTTCAGGACAGAGAAGTTTATGCGGGAGCAAGAGACTTGCAGGTCCATTTGGAAAGGGAAGCATTTGCTAGAGGCAATCATGATGCTAG GAGATACTCTATGCTCTCTGGTGAAAGGGATGGACATGTTGAATACCAGCAGGCGGGCTCTATGCACAGAGATGAGTTTCCTTGTGATTTATTCATGAGT GAAAAGGAATATAGAACGTATGGCCTTTCAGGAGAGAGAAGAAAGTTGACTCCCTCTCATCATATTCCATCCACTCTAGACCCGTACCAGAGAGACCAGG AAAGAGAACACTTTCTTAGACAGCCAGACCCTATATGCAGAGACACTGTACCTTTGCAAAGAGAAGCCGTTCTGGCTGTTCCTCTCTACTTGAACCAGCC ATATAATTCTAGTGGTAGACGTGAATTGCCACCAGCCGTTACGTCGATACCTCCAACTTCTTCTGGCTCTGCTCTTGCTGCTTTGGACCCATACACAAGG GATCCATATTATACTTACCATCATGGTGCTTCATCTGCAGATGCATATGTGCCACCTCCAAGGAGAGATGAACTTTCTTCAGGTTCCTATTATGTTGATG GTCGTAGAGAGACTTACCTATTTGAGGCAGATCCCTTGCGTAGGAGGGAAGCTGATCAAGAGGGTAGATTATACTCGACGCATGCTTCTGATGCATTGTC AAATTATAACAAGTTACTCCAGTACCACGGAGCCAAGCCTGAAACTGCACCTCCATCAGTTTCATCTCGGTACTCCTTTGCTGGGCCATCTGTGTACTAT CGCTAA
AA sequence Show only first row Show all	>Potri.005G043100.2 pacid=42803330 polypeptide=Potri.005G043100.2.p locus=Potri.005G043100 ID=Potri.005G043100.2.v4.1 annot-version=v4.1 MEQEINDTETELAEASTKSQSTENNNMETENPIEASTKLQSEINNNGDGNHVDALTKGQSSRRRTPKSLRAKSKTIEKPSANNSLKSKKAKSSPKSQGRN RKKNKDIIQGKGERNRNEHGEANNLNSSEKNVSKKERIEKGQEIRKNQERFVGSNKGQKNQKSGEKHGVLVDKSSRNKKNKGKLDEKEKNGWDEKKKEKL GGMIFMCSAKTKPDCFLYRVMGVTMNKKELILGVKPGLKLFLYDFDLKLMYGIYEASSAGGVKLEPKAFGGSFPFQVRFVVHKDCFPITESVFKKAIKDN YNEKNKFKTELTVRQVLKLSALFRPVIGPVRSPPMATVQDREVYAGARDLQVHLEREAFARGNHDARRYSMLSGERDGHVEYQQAGSMHRDEFPCDLFMS EKEYRTYGLSGERRKLTPSHHIPSTLDPYQRDQEREHFLRQPDPICRDTVPLQREAVLAVPLYLNQPYNSSGRRELPPAVTSIPPTSSGSALAALDPYTR DPYYTYHHGASSADAYVPPPRRDELSSGSYYVDGRRETYLFEADPLRRREADQEGRLYSTHASDALSNYNKLLQYHGAKPETAPPSVSSRYSFAGPSVYY R

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32910			DCD (Development and Cell Deat...		Potri.005G043100 [exp]	0	1
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	5.00	0.8928
AT5G25520			SPOC domain / Transcription el...		Potri.006G246800 [exp]	6.00	0.8853
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	6.92	0.8834
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Potri.001G151700 [exp]	8.12	0.8489
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.014G128300 [exp]	11.22	0.8846
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	12.00	0.8655
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	15.42	0.8379
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	15.65	0.8821
AT4G02720			unknown protein		Potri.002G051500 [exp]	17.83	0.8742
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	18.33	0.8685

Compare expression of checked genes

Potri.005G043100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.