Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27240 555 / 3e-179 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G06340 360 / 1e-110 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT3G04980 363 / 5e-107 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04960 219 / 1e-61 Domain of unknown function (DUF3444) (.1), Domain of unknown function (DUF3444) (.2), Domain of unknown function (DUF3444) (.3), Domain of unknown function (DUF3444) (.4) AT5G18750 214 / 3e-57 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18740 198 / 3e-55 Domain of unknown function (DUF3444) (.1) AT3G05110 191 / 2e-53 Domain of unknown function (DUF3444) (.1) AT5G18730 191 / 1e-51 unknown protein AT4G27980 186 / 1e-49 Domain of unknown function (DUF3444) (.1) AT5G53150 174 / 6e-45 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G029500 [exp] 1644 / 0 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 527 / 2e-170 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 315 / 5e-93 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 309 / 3e-91 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 308 / 2e-90 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 278 / 2e-84 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.001G057200 [exp] 186 / 1e-48 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196301 [exp] 167 / 1e-47 AT5G18730 158 / 1e-46 unknown protein Potri.003G171200 [exp] 180 / 1e-46 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036769 [exp] 696 / 0 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 685 / 0 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 454 / 3e-142 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 352 / 3e-105 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 347 / 5e-102 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012795 [exp] 323 / 5e-95 AT5G18750 311 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 304 / 1e-89 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 304 / 1e-89 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10018975 [exp] 280 / 9e-80 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10042540 [exp] 248 / 3e-68 AT5G27240 210 / 4e-56 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF11926 [poplar] [flax] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Potri.005G043200.2 pacid=42804956 polypeptide=Potri.005G043200.2.p locus=Potri.005G043200 ID=Potri.005G043200.2.v4.1 annot-version=v4.1 ATGGAGTGCAACAAAGATGAGGCCATAAGAGCAAAGGATATCGCGGAGAGGAAGATGCAAAATGGTGACTTTGAAGGCGCAAAGAAAATTGCATTGAAGG CGCTGCAACTCTACCCTGATCTTGAGAATATTTCCCAAATGTTGGCGGTCTGTGAGGTTCATTGTTCTGCACAAAATAAACTATACGGGTCAGAAATGGA TTGGTATGGAATTCTCCAAATTGAACGCTTTTCTGACGAGGCAGTTATCAAGAAGCAATACAGAAAGTTTGCGCTCTCGCTTCATCCAGACAAGAACAAG TTTTCTGGTGCAGAGGCGGCTTTCAAACTGATTGGTGAAGCAAATAGGGTGCTTACAGACCCAGCCAAGCGTTCTTTGTATGATTTGAAGTGTAAACGTT CAGTGAGACCTCCTGCACCAAGGCCGACATCCCATCAGTCAAATCAGAACTCCATTGCCAAGAAGCAGCATGAGGCTAACAAATTTTCTAGCGCGCCTGG TTCACAGTACATGAGTGCGCATCCATACCAGCCACAGCGACCAACATTCTGGACATGGTGCACCTCTTGTAATATGAGGTACCAGTACTACAGAGAACTT CAAAATAAAACTTTGCGCTGTCAAAGTTGCCAGAATTCTTTCATTGCAATCAATTTGGATATTCATGGAGTGCTTAATGGATCACCCTGGAGTCAATTCC CCAATCAGAATGGAGTTCCAAATCAGGGGCCCTCTAAAGTTGTTCCACAAAGAAACAGTGGAAAGCCTTCTGGTGCTAGTTTTTCAGACAGGTTTAGACC AGTTGACATTGGTGGGAGTTCTAAACCGAGTGAGGTGAAAGCAGGAAATAACATAAAAAATGGTGGTGCTTCCAAAGATTTGGGAACTTCTAAAGGTGCA AGCAGGAAGAGAGGAAAGCAGTCTCGAGTGGAATCTAGTGAGAGTTTTGAGACAGGAAGCAATGATGACAGTGATGAAGATGTGGTTATTCAAGAAAATA GAAGTAGTATTTCTGGACAGAATTCAGGATCCTGTGGAGGCAATCAACCTAGGAGATCTTCAAGGCAAAAGCAGAATGTTTCTTACAAGGAAAAATTAAT TGATGATGATGATTTTTCTGTATCCGCATCAAAAAGACAGAGGGTGAATGGATTGTCTAGTGTCATTGAAGAGGAGATTAAAGAAGCAGTCAGGGATGGC AGGTTACATAAGGAGCAATCTTCAGCTGGTGTGGATGCTGCTGCAGTGGATAGAAATAAGAAGGAGGTCAAGCAAAGGTCAAGTTCGGTTCTGGAAGAAA GCTTGTCAAATAAGAAAAGCAAAACTGGTGTGTTCACGAAGAGGGAGGAAGCATCCACGGTGGAGAAAGCTGATGCACTATCAGATAATAAAGATGGAAA ACCCAAAGCTGATGACATTAGAAATCCAGAGACATTAGAAATCCCTGATCCAGATTTCAGTAATTTTGAGAATGACAAGGCTGAAAACTGTTTTGCTGTT AATCAAATGTGGGCTATTTATGATGATACAGATGGCATGCCAAGATTCTATGCTCGGATCAAGAAAGTTCTCTCACCTGGTTTCAAGCTACTGATAACTT GGCTCGAGGCTAGCTCAGATGTCGCACATGAGAAAGACTGGTCAGACAAGGATTTGCCTGTTGCATGTGGTAAGTTTGAAAGTGGGGACACTCAAAGAAC TGCAGATCGTGCTATGTTCTCTCATCAGATGTGCTTTATGAATGGCAATAGCAGAGGCAGTTACTTGATATATCCTCAAAAGGGGGAAACCTGGGCACTC TTCAAGGATTGGGAAGTGAAATGGAGTTCTGAACCAGAAAAGCATAGACCACCTTACAGATTTGAATTTGTGGAGGTCCTATCAGATTTTGATGAGAACT TTGGCATTGGAGTTGCGTATTTACAAAAAGTGAATGGATTTGTCAGCATTTTTCGGCGAGCTGCTCGTGATAGGGTCATCCAATTTTGCATTCCACCAAC TGAGCTGTACAAGTTTTCACACCGGATTCCTTCGTTTAGAATGTCTGGCAAGGAAGGAGATGGTGTTCCTGCTGGGTCTTTTGAACTTGATCCTGCTTCT CTGCCTAGCAATCTTGATGACCTCAGCGATCCCAGTGATACTAAGCTGGAAAAGGAAAATGTGCATAATCAATCAACTAATTTGTGTTCTCAATCTCCCA AAAGTGAATTGAAAACCACAAAGGTCTCCAGGAAGATTTGCACGCCCAAGAAATATGAGAGTGGACCAGAAATAGGGAGCTCAATCTTTGGAAAATCTCC AACAGACACAATTGTAATTGTTGCAGGTCTATGTGCAAGAAACTGGGATGGTAGGAAGGTCAAAGACCCCGGCAACATTGCTCAGCCTGGAGGAATTAAT ATTTCATCCCCAGCTAAAGATAGGATTGAGACCCCTGAGAAACAGAATAAGAGTGAACTTGTAGCAGATGCATTGACACCTAGAAGATCTCCAAGGGATT TAAGTAACAGAAATGGTGAAGTTAATGCTAGTCAGGGTATGACTGAGGGGGATCCTCAAAAGAATACTGCAGCCAACAATGATGTAAGCCGTGGGAAACC AAGTTCTTTGTTGAGTCAACCTGATGATATGATGCATGCGAAGGATGGTGGTTCAGTTGGTCTCATAATAAGTGGTATATCTTCTGGTCGTAAAGTTGTA GAGCTAGAAGTAGAGTGCTATAATTTCGAGAGGGAAAAGTCACAGGATAAATTTCAGCTTGATCAAATATGGGCACTTTACAGCAATGATGGTGGGCTGC CCAGGAATTATTGTCAAATCAAGGTGATTGATTCTACCCCTAATTTCAGATTGCATGTGGCAATGCTTGAAGCGTGCTCGCCTCCAAAAGATGCAAGGCG GCCAGTTTGTTGTGGTATATTTAAAGTTAACGATGATGAAACCAAGGTGCTCTCCACTTCTAAATTCTCTCATCTGTTGAAAGTTCAATCCATCGGGAAC AGCAAGTATGAAATTCACCCCAGAAAAGGCGAGATATGGGCACTATATAAGAACTGGAATTCTGAGTCATGTTCAGACCAGAGCGTTGGTGAATCTGACA TTGTTGAGTTGCTGGAAGATAATGAATGCAGTGTGAAAGTTGTAGTTTTGATTCCTGCTAGAGTAAGTGAATCTCCTGGTAGAAATAAATGTTTTTACTG GGCTCCTAGAATCCAAAGATCAAAAACTGGGGTTCTGGATATACCACGAGCCGAGTTTTGTAGATTTTCACATCAGTGTTCTGCTTTCAAGCACGCTGGA GAGAAAGGTAAGTGCCCGAGAAGCTATTGGGAGATTGATCCTTCATCAATTATTTCTAATCCTGTAATTTTGGTAGATTGA
AA sequence Show only first row Show all	>Potri.005G043200.2 pacid=42804956 polypeptide=Potri.005G043200.2.p locus=Potri.005G043200 ID=Potri.005G043200.2.v4.1 annot-version=v4.1 MECNKDEAIRAKDIAERKMQNGDFEGAKKIALKALQLYPDLENISQMLAVCEVHCSAQNKLYGSEMDWYGILQIERFSDEAVIKKQYRKFALSLHPDKNK FSGAEAAFKLIGEANRVLTDPAKRSLYDLKCKRSVRPPAPRPTSHQSNQNSIAKKQHEANKFSSAPGSQYMSAHPYQPQRPTFWTWCTSCNMRYQYYREL QNKTLRCQSCQNSFIAINLDIHGVLNGSPWSQFPNQNGVPNQGPSKVVPQRNSGKPSGASFSDRFRPVDIGGSSKPSEVKAGNNIKNGGASKDLGTSKGA SRKRGKQSRVESSESFETGSNDDSDEDVVIQENRSSISGQNSGSCGGNQPRRSSRQKQNVSYKEKLIDDDDFSVSASKRQRVNGLSSVIEEEIKEAVRDG RLHKEQSSAGVDAAAVDRNKKEVKQRSSSVLEESLSNKKSKTGVFTKREEASTVEKADALSDNKDGKPKADDIRNPETLEIPDPDFSNFENDKAENCFAV NQMWAIYDDTDGMPRFYARIKKVLSPGFKLLITWLEASSDVAHEKDWSDKDLPVACGKFESGDTQRTADRAMFSHQMCFMNGNSRGSYLIYPQKGETWAL FKDWEVKWSSEPEKHRPPYRFEFVEVLSDFDENFGIGVAYLQKVNGFVSIFRRAARDRVIQFCIPPTELYKFSHRIPSFRMSGKEGDGVPAGSFELDPAS LPSNLDDLSDPSDTKLEKENVHNQSTNLCSQSPKSELKTTKVSRKICTPKKYESGPEIGSSIFGKSPTDTIVIVAGLCARNWDGRKVKDPGNIAQPGGIN ISSPAKDRIETPEKQNKSELVADALTPRRSPRDLSNRNGEVNASQGMTEGDPQKNTAANNDVSRGKPSSLLSQPDDMMHAKDGGSVGLIISGISSGRKVV ELEVECYNFEREKSQDKFQLDQIWALYSNDGGLPRNYCQIKVIDSTPNFRLHVAMLEACSPPKDARRPVCCGIFKVNDDETKVLSTSKFSHLLKVQSIGN SKYEIHPRKGEIWALYKNWNSESCSDQSVGESDIVELLEDNECSVKVVVLIPARVSESPGRNKCFYWAPRIQRSKTGVLDIPRAEFCRFSHQCSAFKHAG EKGKCPRSYWEIDPSSIISNPVILVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27240			DNAJ heat shock N-terminal dom...		Potri.005G043200 [exp]	0	1
AT2G35050			Protein kinase superfamily pro...		Potri.003G110000 [exp]	3.46	0.8418
AT1G35660			unknown protein		Potri.019G083100 [exp]	4.00	0.8790
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.015G100900 [exp]	4.69	0.8116
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G012900 [exp]	7.07	0.8265
AT1G64320			myosin heavy chain-related (.1...		Potri.001G094332 [exp]	7.93	0.8332
AT3G12590			unknown protein		Potri.010G207900 [exp]	8.48	0.8048
AT3G19610			Plant protein of unknown funct...		Potri.001G294600 [exp]	10.95	0.8135
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Potri.017G002000 [exp]	11.40	0.8212	Pt-TEJ.2
					Potri.001G076050 [exp]	13.26	0.8508
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.002G112300 [exp]	15.42	0.8205

Compare expression of checked genes

Potri.005G043200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.