Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07610 135 / 5e-36 F-box family protein (.1) AT3G17570 63 / 1e-10 F-box and associated interaction domains-containing protein (.1) AT5G03970 61 / 4e-10 F-box associated ubiquitination effector family protein (.1.2) AT3G17490 60 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT3G16210 58 / 5e-09 F-box family protein (.1) AT2G41473 53 / 9e-09 F-box family protein (.1) AT4G04690 57 / 1e-08 F-box and associated interaction domains-containing protein (.1) AT1G50870 56 / 1e-08 F-box and associated interaction domains-containing protein (.1) AT3G10430 55 / 3e-08 F-box and associated interaction domains-containing protein (.1) AT1G11620 55 / 4e-08 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067800 [exp] 271 / 9e-88 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.013G065500 [exp] 244 / 3e-77 AT5G07610 155 / 6e-43 F-box family protein (.1) Potri.010G254000 [exp] 137 / 1e-36 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.003G215900 [exp] 123 / 3e-31 AT5G07610 101 / 2e-23 F-box family protein (.1) Potri.018G132800 [exp] 120 / 4e-30 AT5G07610 158 / 1e-43 F-box family protein (.1) Potri.006G071100 [exp] 95 / 2e-21 AT5G07610 52 / 4e-07 F-box family protein (.1) Potri.004G232700 [exp] 84 / 1e-18 AT5G07610 117 / 3e-31 F-box family protein (.1) Potri.011G137200 [exp] 77 / 2e-15 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 74 / 2e-14 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042989 [exp] 84 / 6e-19 AT5G07610 82 / 9e-19 F-box family protein (.1) Lus10017086 [exp] 74 / 3e-14 AT5G49610 500 / 7e-179 F-box family protein (.1) Lus10037802 [exp] 62 / 2e-10 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10040800 [exp] 61 / 5e-10 AT3G21120 84 / 8e-18 F-box and associated interaction domains-containing protein (.1) Lus10035796 [exp] 59 / 2e-09 ND 45 / 1e-04 Lus10013987 [exp] 59 / 3e-09 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10040838 [exp] 59 / 5e-09 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10013986 [exp] 58 / 7e-09 ND 55 / 7e-08 Lus10042547 [exp] 56 / 3e-08 AT5G03970 405 / 3e-140 F-box associated ubiquitination effector family protein (.1.2) Lus10007302 [exp] 56 / 4e-08 AT1G15680 49 / 4e-06 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.005G043500.2 pacid=42804076 polypeptide=Potri.005G043500.2.p locus=Potri.005G043500 ID=Potri.005G043500.2.v4.1 annot-version=v4.1 ATGATGAGAGACGGCAAGTTAAAACAATCTTGCTATGTGCCTTCTTCATCAGCAGAAGTAATAGGGAACAACCTAGACCTCGTTACTGAAATCTTGCTTC GTGTACCGGCAAAACCACTCCTTAAGTTCAAGTGCGTGTCAAAGCAATGGCTTTCTTTAATTTCAGACCCTAAATTCTGTGCCTCTCATACTCACCACCA ACCACCAACAGCACCCTCTGCTCTCTTCCTGCTCAGCTACTTGGCTTCCAGCCCTCAGCTAATTGTCCCTTTAAAAAATGAGCCTATGCCAAACACTATG CCCTTCTTGGACCATCTAAATATTCCTGGATTCTGTATTGATCAGTCTTGTAATGGGTTGCTTCTCTGCTCTTTCACTTGCATAGACTCAACTGATTTGG GGTACTGGTTTTTTATTTGTAATCCCACCACCAATCATTTCAAGAGGATTTCTCACCCTGTTCACAAATTTGACGAGTTTCATCATCCACCTGTTCTTTG TTTGGCTTTTGATCCATTAAAATCATTCAACTATAAGGTTGTTTGTTTCTACCAAGTTGTTTCTGGTGGATATCAAATTGATGTATATTCGTCGGAGACT GGGTCCTGGGGTTTCAATCAAATTCCTTTTGTAAATCCTCCTTCTTTGAAAATTCATGAGTGGGTTTTTTGTAATGATGCTATTCACTGGTGCAGTCTTG AAGAGAACTCGCAATATTTTGATGTTTCTAGTGAGAGCGTGAATATTCTGCCAATGCCTCCGAGAGGTAAACTAGACATTACGTACTTTGGTGGTTCTCG AGGCCATTTGCATATGGGCGTTGGCATCAGCCGTTTAGTCTTAGAATTTGATATTTGGGAGCTGAAAGAGGATTATTCAGGATGGTTTATAAAGTATCAT CTGGATCTTCATTCTATGAGAAGAGTGTTAGCCAATCGATGTCCGTTGTCAGTTTTGAGCCTTATCCGGGCTGAAAATGAAGATGAGTCGACGATTGTGT TTGTTGTGGATGATAGAGCAATGTCCTATAATCTTTATGACAGGAGATCAAAAATGCTCTGTGATTTGCTGCAGAAAACCAATCCTTATAGTGCTTATTT AAAGTTTCATGCTTATGAATACTTTGAGACACTTATTCATGTTTGA
AA sequence Show only first row Show all	>Potri.005G043500.2 pacid=42804076 polypeptide=Potri.005G043500.2.p locus=Potri.005G043500 ID=Potri.005G043500.2.v4.1 annot-version=v4.1 MMRDGKLKQSCYVPSSSAEVIGNNLDLVTEILLRVPAKPLLKFKCVSKQWLSLISDPKFCASHTHHQPPTAPSALFLLSYLASSPQLIVPLKNEPMPNTM PFLDHLNIPGFCIDQSCNGLLLCSFTCIDSTDLGYWFFICNPTTNHFKRISHPVHKFDEFHHPPVLCLAFDPLKSFNYKVVCFYQVVSGGYQIDVYSSET GSWGFNQIPFVNPPSLKIHEWVFCNDAIHWCSLEENSQYFDVSSESVNILPMPPRGKLDITYFGGSRGHLHMGVGISRLVLEFDIWELKEDYSGWFIKYH LDLHSMRRVLANRCPLSVLSLIRAENEDESTIVFVVDDRAMSYNLYDRRSKMLCDLLQKTNPYSAYLKFHAYEYFETLIHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07610			F-box family protein (.1)		Potri.005G043500 [exp]	0	1
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047200 [exp]	1.73	0.8972
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.008G123100 [exp]	4.00	0.8675
AT4G33890			unknown protein		Potri.001G296200 [exp]	5.19	0.8141
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.006G102800 [exp]	5.65	0.8287	PtrAMT2-1,AMT2.1
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044200 [exp]	6.00	0.8506
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241800 [exp]	7.34	0.8644
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413700 [exp]	7.74	0.8327
AT2G35610		XEG113	xyloglucanase 113 (.1)		Potri.004G235800 [exp]	8.66	0.8525
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	9.79	0.8610
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Potri.016G059300 [exp]	12.00	0.8076

Compare expression of checked genes

Potri.005G043500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.