Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46280 216 / 1e-63 protein kinase-related (.1) AT3G46260 211 / 4e-62 protein kinase-related (.1) AT3G46270 209 / 4e-61 receptor protein kinase-related (.1) AT1G24485 206 / 1e-59 unknown protein AT1G51790 213 / 2e-59 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 211 / 5e-59 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G05700 209 / 3e-58 Leucine-rich repeat transmembrane protein kinase protein (.1) AT5G59680 209 / 4e-58 Leucine-rich repeat protein kinase family protein (.1) AT2G19210 209 / 5e-58 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51805 198 / 3e-54 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G030800 [exp] 764 / 0 AT2G19210 224 / 2e-63 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.013G030100 [exp] 640 / 0 AT1G05700 207 / 3e-58 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.013G030866 [exp] 512 / 6e-180 AT3G46280 183 / 2e-53 protein kinase-related (.1) Potri.008G150200 [exp] 182 / 1e-50 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.019G094600 [exp] 181 / 3e-48 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.010G090800 [exp] 175 / 6e-48 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.019G094700 [exp] 179 / 1e-47 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.006G132100 [exp] 179 / 2e-47 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094300 [exp] 178 / 2e-47 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025849 [exp] 208 / 1e-57 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10015057 [exp] 178 / 3e-47 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10037051 [exp] 163 / 4e-42 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036935 [exp] 162 / 1e-41 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019907 [exp] 161 / 1e-41 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 160 / 5e-41 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10002405 [exp] 153 / 4e-40 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002456 [exp] 151 / 2e-39 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10027903 [exp] 151 / 2e-39 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10019237 [exp] 121 / 2e-28 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.005G043700.1 pacid=42804649 polypeptide=Potri.005G043700.1.p locus=Potri.005G043700 ID=Potri.005G043700.1.v4.1 annot-version=v4.1 ATGGCTGGTTGTCTTGTGTTGTTACTCTTCCTAGCTCTCCTCTCTTTTTCAGGAAATGCAGATGTTAGCGTTGATTGTGGAGCATCCGATTCTTATGCGG ACGAGAATTCTATAGTGTGGATAGGAGATGATGACCTCTTCAAAAACGGCCAGTCTGAAGTGGTGCAACCCAGCAATCCAGCATCGCATGTAATGAGCAC TCTAAGGGTGTTCACAACTCTAAAGAAGAATTGTTACTCTATCACAGCCGATAAGGGCAGTCTAGTTCTTGTTCGAGCCAGCTTCTTCTATGGGAATTAT GACAAAAGATCATCTCCTCCATCTTTTGATCTGCTTTTTGATGGAAACAACTGGGCCACTGTCAAGACCTCACTTGATCAACTTGTATATTATGAAGTAA TGTATGTTGTCAAAAGCGATACAACAAGCATCTGTCTTGCCCAAACACAACCTAACCAGTTCCCATTTATATCAGCACTTGAGGTTAGGAACTTGGATTC TAAAATGTATGGCGATGTCGATCCGAATTATGCACTGTTTTTAAGGTCAAGGATTGCTTATGGTGCTAATACAACAGTAAGGTTCCCGGATGATGGTTAT GATCGCATTTGGGTTCCAGAAAGAGTTGGTAGCGGGCTAGTTTCGGTTGCAAGCGACGCAATACTCATCGATGTTGCTAATGCACCGGATAATCCTCCAC CAGAAGTCCTGCAGAATGCTATTACAACCTCTAACACGTCTGCTTCTATCACTTTGAACCCTGGTTTTCCAGATCAAGATGTTTCAGTCTACATGAACTT GTATTTCTCTGAAGTGACCGAGCTGGATGCCACTCAGAAAAGATCCTTCAACGCTTACATCGATAACATAAAATCATCAGAACCCATAATCCCACCTTAT GAAGCAGCGAAGGAAGTGTCGGCTAACTTCACTGCTTCGGCAAACACCTCAATTTCTTTGGTTTCCACCACTGATTCTACACTTCCTCCACTTATCAATG CCATGGAAGTCTTTTTTGTTAGTGATCGCCTGACAGATGGAACCAATAGTAAAGATGTGGAAGGTTTAGGTGAACTCCAAAACACATTTAGTGTATTACA AGAATATTGGTCTGGTGATCCATGTCTCCCTTCTCCATACACATGGGAAAGGATTAGTTGTAGCAACGATGCCATCCCTCGCGTAACAGCATTGGACCTT AGTAGCTTGGATCTTTCAGGGCCACTTCCAGATTTTAGTTCCATGGATGCCCTTGTGACAATCGATTTGCATAATAACAGCATAACTGGACCGATTCCGG ATTTTCTTGGCGCCTTACCTAACCTCAAAGATCTGAATTTGGCAGACAATTCCTTCAGTGGACCAATACCTCAATCAATATCAAGCAATAAGAAGTTGAA ATTTGTGGCATCAGGCAATCCAGACTTGTGTGTCTCCGGCAAGTCCTGTCAGCCAACTAGTACTGATGGCACTGTCATTACATCAACTCCATCAGGAGGC AGAAAAAAGAGTAATAAGCTTCCAGTGATACTCGGAACCATAATTCCAATCTTCGTATTTTTCTGGGCGATTGTGGGATTTTTAGTGCATCACAAGAGAA GAACAGCAGCCATAGCCGCAATCACAGCAGGAAAAACTGGAGGTGCCAACAGGCCTAGTGTTGCCAACACGATGACGGGTCAAGCTGGTGAAGCTGTGAT AAATGAGATCAGGGTCAACATCCAAGACCAAACAGCGTCAGAGAATGGTGATCAATCGGTTCCACAGCAATGA
AA sequence Show only first row Show all	>Potri.005G043700.1 pacid=42804649 polypeptide=Potri.005G043700.1.p locus=Potri.005G043700 ID=Potri.005G043700.1.v4.1 annot-version=v4.1 MAGCLVLLLFLALLSFSGNADVSVDCGASDSYADENSIVWIGDDDLFKNGQSEVVQPSNPASHVMSTLRVFTTLKKNCYSITADKGSLVLVRASFFYGNY DKRSSPPSFDLLFDGNNWATVKTSLDQLVYYEVMYVVKSDTTSICLAQTQPNQFPFISALEVRNLDSKMYGDVDPNYALFLRSRIAYGANTTVRFPDDGY DRIWVPERVGSGLVSVASDAILIDVANAPDNPPPEVLQNAITTSNTSASITLNPGFPDQDVSVYMNLYFSEVTELDATQKRSFNAYIDNIKSSEPIIPPY EAAKEVSANFTASANTSISLVSTTDSTLPPLINAMEVFFVSDRLTDGTNSKDVEGLGELQNTFSVLQEYWSGDPCLPSPYTWERISCSNDAIPRVTALDL SSLDLSGPLPDFSSMDALVTIDLHNNSITGPIPDFLGALPNLKDLNLADNSFSGPIPQSISSNKKLKFVASGNPDLCVSGKSCQPTSTDGTVITSTPSGG RKKSNKLPVILGTIIPIFVFFWAIVGFLVHHKRRTAAIAAITAGKTGGANRPSVANTMTGQAGEAVINEIRVNIQDQTASENGDQSVPQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46280			protein kinase-related (.1)		Potri.005G043700 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241900 [exp]	3.74	0.7515
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039200 [exp]	5.19	0.7482
AT5G23360			GRAM domain-containing protein...		Potri.017G152900 [exp]	6.48	0.7324
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.015G023200 [exp]	8.48	0.6780
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014512 [exp]	9.94	0.7097
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039100 [exp]	11.40	0.6897
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242000 [exp]	12.00	0.7226
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G258200 [exp]	12.40	0.6668
AT4G12731			unknown protein		Potri.009G022366 [exp]	15.29	0.7328
AT3G17380			TRAF-like family protein (.1)		Potri.014G055400 [exp]	19.74	0.6805

Compare expression of checked genes

Potri.005G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.