Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27230 125 / 2e-29 Frigida-like protein (.1) AT5G48385 121 / 1e-28 FRIGIDA-like protein (.1) AT3G22440 117 / 2e-27 FRIGIDA-like protein (.1) AT4G14900 112 / 9e-26 FRIGIDA-like protein (.1) AT1G31814 101 / 2e-22 FRL2 FRIGIDA like 2 (.1) AT5G16320 100 / 6e-22 FRL1 FRIGIDA like 1 (.1) AT5G27220 94 / 3e-19 Frigida-like protein (.1) AT4G00650 46 / 6e-05 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043900 [exp] 984 / 0 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 926 / 0 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.002G206200 [exp] 160 / 7e-42 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.005G044200 [exp] 154 / 2e-38 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.007G050800 [exp] 148 / 2e-37 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.014G175200 [exp] 137 / 9e-34 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 134 / 6e-33 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 115 / 6e-27 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.018G078701 [exp] 73 / 3e-13 AT3G22440 189 / 4e-53 FRIGIDA-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033828 [exp] 246 / 1e-68 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10038038 [exp] 241 / 8e-68 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10009979 [exp] 235 / 2e-65 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10004131 [exp] 170 / 1e-43 AT5G48385 72 / 8e-13 FRIGIDA-like protein (.1) Lus10004132 [exp] 145 / 3e-36 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1) Lus10002146 [exp] 134 / 1e-32 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10008744 [exp] 133 / 2e-32 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10042965 [exp] 128 / 9e-31 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10032466 [exp] 124 / 2e-29 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10006113 [exp] 111 / 1e-25 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [poplar] [flax] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Potri.005G044000.5 pacid=42804889 polypeptide=Potri.005G044000.5.p locus=Potri.005G044000 ID=Potri.005G044000.5.v4.1 annot-version=v4.1 ATGGAAATTTTGGTTAAGTTGAAAGAAGAGAACTCTAAGGAGTGGAGAAGAGAGCTTGAGTTGAAAGAGATAAATTTTGGGCAGCAAGTTAGAGAAAGGT ATGATGAAATTGAGTTGAAGGAGAAGAAAGTGGAGGAAGAGTTTAGAGAAGTTGCATTGAGAGAAGAGAGGGTGGAGAAGAGATTTAGAGAGGTTGAAGA GAAGGAGAGGAGGGTTAGAGAGCTGTTTAAGGAAGTTAGGGTGAAAGATGACGAGTTTAGGGAACGGAGAAAAGGGGTTGAGTTGAAAGGTAGGGAGGTT GAGGAGAGGATTAAAGAGATTGGATTCAAAGATAGGAAGGTTGGGGAGAGGCTTAAAGAGGTTGGATTGAAAGAGAGGAAGGCTGAGCAGAGGCTTAAAG ATCTTGGATTGAAAGGCAGGGAGGTTGAGGAGAGGGTTAAAGAGATTGCATTGATGGAGAAGAATGTTGGCAAAAGGAGCGAGGAAGTTGAATTGAATAG GAGGAAATTAGAGGAAGGATTTAGAAAACTTGAGTTGAAAAGCAGGGAGGTTGAGGAGATAATTAAAGGGGTTGAGTTGAAGGAGAAGATATTGGAGGAA CGGTATAGGAGGTTTGATTTGAAAGGGAAGCAAATTGAAGAGGTTCAGTTGAAGGAGAAGGAACTAGAAGAGAGGTTACGGGAAGTTGAAATGGAAAATA AGAAGTGCTTGGAGCGAATTAAGGAGTTTGAGTTGAAGGAGAAACAAGTTGCTGATGCTTGTAATGCCCGTGTGAAGTCGGAGACCGTAGATTATTCTAT GGATGCTAACCTACATTTTTCAGTGAAAATGGATGGAAAGGCATTGCAAATTTTATTAAATAAGCGTTGTAAACATGATGAGAAGATGAAGAATGAGGTA TCTATTGCTTTGGGGCTCTCCTCGGATCCTGCAAAGCTGGTTTTGGATGCAATGGAAGGGTTTTACCCACCCCATTTGAGGGAGGGTGATGTGGAGTTCA AAGAGGTTGTTGTCAAAAGAAGTTGCAATCTTTTGCTTGAGCAATTAACGAAAATATCCCCAACAATCAAACCCCATGTGAGAAAAGAAGCAACGAAACT TGCCTTTCTTTGGATGACAAAGATGACAGTGGATGATCAGCACAATTTAGATGTTATGGGATTTTTTTATCTGTTGGCTGCTTATGGACTAGCCTCTGCT TTTGATTCAGATGAGCTCATAAGTCGTTTGGTGATTATTGCTCGAAATAGGCAGATTCCTGAATTCTTGCGTGTCCTTGAACTAGGAGATAAAATTCCTG GTTTTATTGAAAATCTTATCGTGAAGAAACAGCAAATGGAAGCTATCAGATTCATTTGTGCATTTGAGATGGTTAATCGGTTCCCACCCGGACCTATCTT GAGGGATTACTTAAGTGGTTCCAAGATTGCAGCCAAAAAAATTAGGAGGAGCAATTCAATTGAAGGACTGGTTGAGTCTGTAAACAGAAGAGTAGCTGAC CTAATGGTTGTACTGAAATGCGTTGAAGATTACAAGCTTGAAACTGTATTCTCACCAAATACCCTCAAGCAACAAATAAAAGATGTCGAAAGACAACTTT CAATTAGTGAAACAAAGTTACCAAACCTGGGCAGCAATTCTCCTCAGCCTAATCTGAGTGAGAAGAAACGTTTGTCCCCAAAAGCTGCTGCTTCTGCCTC TGTCCTTGCATCCAAATCTGTCTCTGCCACTAAACCTGCTCTCAATTCCACGATGGCTGCCTGTACTGCTACCTCAGCTGCTCCCATCACAGTCACCTCC TACATTGCTTACCCGGTCACAGTCACCTCTCTTGCCCCAATGGCTGCCTTTATTGCTAATCCAGTCGTCCCTATCATTGTTACTTCTCCCTCCACAACAG CTGCAGCCGCTGTTACCCCAATAGCAGTTGCCTCTCCCGCCTCTACTGCATCCATTACTGCCTCCATTACCCGAAGTACAGTTGGCCCCCCCTCCTCAAG CAGTGCATCACCTTCTGGCTCAATCCCCAAGACTGAACCAAAATACCAGGGCTGTCAAGCACAGTACCAGGGCAGAAATAAACGCTGTCAAGCACAGTAC CAGGGCCGTGATAAGCACCCGCACCCACAAGAACAACACCAGAGTGGAAATAAGCGCCCTCGGATTGCTGAATCATCAGAGGTTCCTCTAAGAGCACCAT TACTTCAAAACACTAGCATTGCACACCCGGTGCCTGTCCCTCATCTGCGAGCAGAAGGTCCTTTTATAAATCAAAGTGCACCATAG
AA sequence Show only first row Show all	>Potri.005G044000.5 pacid=42804889 polypeptide=Potri.005G044000.5.p locus=Potri.005G044000 ID=Potri.005G044000.5.v4.1 annot-version=v4.1 MEILVKLKEENSKEWRRELELKEINFGQQVRERYDEIELKEKKVEEEFREVALREERVEKRFREVEEKERRVRELFKEVRVKDDEFRERRKGVELKGREV EERIKEIGFKDRKVGERLKEVGLKERKAEQRLKDLGLKGREVEERVKEIALMEKNVGKRSEEVELNRRKLEEGFRKLELKSREVEEIIKGVELKEKILEE RYRRFDLKGKQIEEVQLKEKELEERLREVEMENKKCLERIKEFELKEKQVADACNARVKSETVDYSMDANLHFSVKMDGKALQILLNKRCKHDEKMKNEV SIALGLSSDPAKLVLDAMEGFYPPHLREGDVEFKEVVVKRSCNLLLEQLTKISPTIKPHVRKEATKLAFLWMTKMTVDDQHNLDVMGFFYLLAAYGLASA FDSDELISRLVIIARNRQIPEFLRVLELGDKIPGFIENLIVKKQQMEAIRFICAFEMVNRFPPGPILRDYLSGSKIAAKKIRRSNSIEGLVESVNRRVAD LMVVLKCVEDYKLETVFSPNTLKQQIKDVERQLSISETKLPNLGSNSPQPNLSEKKRLSPKAAASASVLASKSVSATKPALNSTMAACTATSAAPITVTS YIAYPVTVTSLAPMAAFIANPVVPIIVTSPSTTAAAAVTPIAVASPASTASITASITRSTVGPPSSSSASPSGSIPKTEPKYQGCQAQYQGRNKRCQAQY QGRDKHPHPQEQHQSGNKRPRIAESSEVPLRAPLLQNTSIAHPVPVPHLRAEGPFINQSAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27230			Frigida-like protein (.1)		Potri.005G044000 [exp]	0	1
AT5G27230			Frigida-like protein (.1)		Potri.005G043900 [exp]	1.00	0.9449
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.001G082100 [exp]	2.44	0.9279
AT3G63500			Protein of unknown function (D...		Potri.001G264100 [exp]	5.47	0.8886
AT2G35540			DNAJ heat shock N-terminal dom...		Potri.003G097800 [exp]	6.00	0.8881
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	6.32	0.8503
AT5G55660			DEK domain-containing chromati...		Potri.001G367400 [exp]	9.21	0.8775
					Potri.005G043750 [exp]	9.53	0.8634
					Potri.008G016200 [exp]	10.39	0.8688
AT1G21651			zinc ion binding (.1)		Potri.019G066500 [exp]	14.69	0.8353
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	16.73	0.8582

Compare expression of checked genes

Potri.005G044000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.