Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27230 116 / 1e-26 Frigida-like protein (.1) AT5G48385 112 / 8e-26 FRIGIDA-like protein (.1) AT3G22440 107 / 4e-24 FRIGIDA-like protein (.1) AT5G16320 102 / 7e-23 FRL1 FRIGIDA like 1 (.1) AT4G14900 102 / 1e-22 FRIGIDA-like protein (.1) AT1G31814 99 / 2e-21 FRL2 FRIGIDA like 2 (.1) AT5G27220 86 / 6e-17 Frigida-like protein (.1) AT4G00650 42 / 0.0009 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043900 [exp] 1033 / 0 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044000 [exp] 887 / 0 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.002G206200 [exp] 147 / 1e-37 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.007G050800 [exp] 142 / 1e-35 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.005G044200 [exp] 136 / 7e-33 AT5G27220 129 / 5e-30 Frigida-like protein (.1) Potri.014G175200 [exp] 129 / 2e-31 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 125 / 4e-30 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.008G153000 [exp] 104 / 2e-23 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.005G043750 [exp] 71 / 3e-13 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038038 [exp] 230 / 3e-64 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10033828 [exp] 224 / 1e-61 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10009979 [exp] 222 / 2e-61 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10004131 [exp] 166 / 1e-42 AT5G48385 72 / 8e-13 FRIGIDA-like protein (.1) Lus10004132 [exp] 149 / 5e-38 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1) Lus10002146 [exp] 127 / 1e-30 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10042965 [exp] 127 / 2e-30 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10008744 [exp] 126 / 3e-30 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10032466 [exp] 121 / 1e-28 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10006113 [exp] 103 / 5e-23 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [poplar] [flax] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Potri.005G044100.5 pacid=42805297 polypeptide=Potri.005G044100.5.p locus=Potri.005G044100 ID=Potri.005G044100.5.v4.1 annot-version=v4.1 ATGGTTGAGGAGAGGCTTAAAGAGCTTGGATCCAAAGATAGGAAGGTTGAGGAGAGGCTTAAAGAGATTGGATCCAAAGATAGGAAGGTTGGGGAGAGGC TTAAAGAGGTTGGATGGAAAGATAGGATGGTTGAGGAGAGGCTTAAAGAGGTTGGATTGAAAGATAGGAAGGTTGAGGAGAGGCTTAAAGAGGTTGGATT GAAAGGTAGGGAGGTTGAGGAGAGGGTTAAAGAGATTGCATTGATGGAGAAGAATGTTGGCAAAAGGAGCGAGGAAGTTGAATTGAATAGGAGGAAATTA GAGGAAGGATTTAGAGAACTTGAGTTGAAAAGTAGGGAGGTTGAGGAGATAATTAAAGGGGTTGAGTTGAAGGAGAAGGAATTGGAGGAACGGTGTAGGG GGTTTGATTTGAAAGGGAAGCAAATTGAAGAGGTTCAGTTGAAGGAGAAGGAACTAGAAGAGAGGTTACGGGAAGTTGAATTCGAAAATAAGAAGTGCTT GGAGCGAATTAAGGAGTTTGAGTTGAAGGAGAAACAAGTTGCTGATGCTTGTAATGCCCGTGTTAAGTCGGAGACAGTAGATTATTCTATAGATGCTAAC CTACATTTTTCAGTGAAAATGGATGGAAAGGCATTGCAAATTTTATTAAATAAGCGTTGTAAACATGATGAGAAGATGAAGAATGAGGTATCTATTGCTT TGGGACTTTCCTCGGATCCTGCAAAGCTGGTTTTGGATGCAATGGAAGGGTTTCACCCACCCCATTTGAGGGAGGGTGATGTGGAGTTCAAAGAGGTTGT TGTGAAAAGAAGTTGCAATCTTTTGCTTGAGCAATTAACGAAAATATCCCCAACAATCAAACCCCATGTGAGAAAAGAAGCAACGAAACTTGCCTTTCTT TGGATGATAATGATGACAGTGGATGGTCAACACAATTTGGATGTTTTGGGTTTTTTTAATCTCTTGGCTGCTTATGGACTGGCCTCTGCTTTTGATTCAG ATGAGCTCATAAGCCGTTTGGTGATTATTGCTCGAAATAGGCAGACTCCTGAATTCTTGCGTGTCCTTGAACTAGGAGATAAAATTCCTGGTTTTATTCA AAATCTAATCTTAAAGAATCAGCCAATGGAAGCTATCAGATTCATTTATGCATTTGAGATGGTTAATCAGTTCCCACCTGGACCTATCTTGAGGGATTAC TTAAGTGGTTCCAAGATTGCAGCCAGAAAAATTAAGAGGAGGAGCAAATCAATTGAAGGACTGGTTGAGTCTGTAAAGAGAAGAGTAGCTGACCTAATGG TTGTACTGAAATGCATTGAAGATTACAAGCTTGAAACTGTATTCTCACCAGATACCCTCAAGCAACAAATAAAAGATGTCGAAAGACAACTTTCAATTAG GAAAACAAAGTTACCAAACCTGGGCAGCAATTCTCCTCAGCCTAATCTGAGTGAGAAGAAACGTTTGGCCCCAAAAGCTGCTGCTTCTGCCTCTGTCCTC GCATCCAAATCTGTCTCTGCCACTAAACCTGCTCTCAATTCCACGATGGCTGCCTGTACTGCTACCTCAACTGCTCCCATCACAGTCACCTCTCTTGCCC CAACTACTTCCGCTATTGCTAATCCAGTCGTCCCTATCATTGTCACTTCTCCCTCCACAACAGCTGCAGCCGCTGTTACCCCAATAGCAGTTGCCTCTCG CCCCACTATCCGAAGTGCAGTTGTCTCCCCCTCCTCAAGCAGTGCGTCACCTTCTGGCTCAATCCCCAAGACCGAACCACAATACCAGGGCGGAAATAAA CGCTGTCAAGCGCAGTACCAGGGCAGTGATAAGCACCCGCACCCTCAAGAACAACACCAGAGTGGAAATAAGCGCCCTCGGATTGCTAAATCACCAGAGG TTCCTCTAAGAACACCATCACTTCAAAACACTGGCTTTGCACAGTCGGTGCCTGTCCCTCATCTGCGAGCAGAAGGTCCTTTTATAAATCAAAATCCATC TGGCGGGCACTACAATTGTCCTGGTTATCGCCCACCAAACCCACATATGAGCTCCCATTATAATTATGGATATCCATATTATCATTAG
AA sequence Show only first row Show all	>Potri.005G044100.5 pacid=42805297 polypeptide=Potri.005G044100.5.p locus=Potri.005G044100 ID=Potri.005G044100.5.v4.1 annot-version=v4.1 MVEERLKELGSKDRKVEERLKEIGSKDRKVGERLKEVGWKDRMVEERLKEVGLKDRKVEERLKEVGLKGREVEERVKEIALMEKNVGKRSEEVELNRRKL EEGFRELELKSREVEEIIKGVELKEKELEERCRGFDLKGKQIEEVQLKEKELEERLREVEFENKKCLERIKEFELKEKQVADACNARVKSETVDYSIDAN LHFSVKMDGKALQILLNKRCKHDEKMKNEVSIALGLSSDPAKLVLDAMEGFHPPHLREGDVEFKEVVVKRSCNLLLEQLTKISPTIKPHVRKEATKLAFL WMIMMTVDGQHNLDVLGFFNLLAAYGLASAFDSDELISRLVIIARNRQTPEFLRVLELGDKIPGFIQNLILKNQPMEAIRFIYAFEMVNQFPPGPILRDY LSGSKIAARKIKRRSKSIEGLVESVKRRVADLMVVLKCIEDYKLETVFSPDTLKQQIKDVERQLSIRKTKLPNLGSNSPQPNLSEKKRLAPKAAASASVL ASKSVSATKPALNSTMAACTATSTAPITVTSLAPTTSAIANPVVPIIVTSPSTTAAAAVTPIAVASRPTIRSAVVSPSSSSASPSGSIPKTEPQYQGGNK RCQAQYQGSDKHPHPQEQHQSGNKRPRIAKSPEVPLRTPSLQNTGFAQSVPVPHLRAEGPFINQNPSGGHYNCPGYRPPNPHMSSHYNYGYPYYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27230			Frigida-like protein (.1)		Potri.005G044100 [exp]	0	1
AT4G31880			unknown protein		Potri.018G109600 [exp]	3.46	0.9305
AT1G20920			P-loop containing nucleoside t...		Potri.002G003600 [exp]	5.29	0.9276
AT1G20920			P-loop containing nucleoside t...		Potri.005G257400 [exp]	6.70	0.9256
					Potri.005G043825 [exp]	8.00	0.9339
					Potri.001G426260 [exp]	10.95	0.8724
AT3G25840			Protein kinase superfamily pro...		Potri.008G119100 [exp]	11.74	0.9124
AT4G35540			zinc ion binding;transcription...		Potri.004G084700 [exp]	13.07	0.9039
					Potri.014G015200 [exp]	14.28	0.8962
AT1G75335			unknown protein		Potri.013G126701 [exp]	17.32	0.8907
AT3G25840			Protein kinase superfamily pro...		Potri.010G126900 [exp]	18.70	0.8981

Compare expression of checked genes

Potri.005G044100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.