Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27220 126 / 3e-29 Frigida-like protein (.1) AT5G27230 92 / 1e-18 Frigida-like protein (.1) AT3G22440 70 / 5e-12 FRIGIDA-like protein (.1) AT5G16320 69 / 9e-12 FRL1 FRIGIDA like 1 (.1) AT4G14900 62 / 1e-09 FRIGIDA-like protein (.1) AT3G12190 50 / 5e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G113400 [exp] 160 / 1e-45 ND / Potri.005G044000 [exp] 153 / 4e-38 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G043900 [exp] 149 / 2e-36 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 140 / 5e-34 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.007G050800 [exp] 83 / 5e-16 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 81 / 2e-15 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.008G153000 [exp] 77 / 4e-14 AT3G22440 710 / 0.0 FRIGIDA-like protein (.1) Potri.005G044050 [exp] 54 / 2e-07 AT5G27230 52 / 3e-07 Frigida-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027765 [exp] 216 / 6e-58 AT5G48385 79 / 6e-15 FRIGIDA-like protein (.1) Lus10033831 [exp] 179 / 6e-46 AT5G27220 153 / 2e-37 Frigida-like protein (.1) Lus10033828 [exp] 126 / 4e-29 AT5G27230 150 / 2e-36 Frigida-like protein (.1) Lus10038038 [exp] 108 / 8e-24 AT5G48385 102 / 2e-22 FRIGIDA-like protein (.1) Lus10009979 [exp] 107 / 3e-23 AT5G48385 107 / 5e-24 FRIGIDA-like protein (.1) Lus10027773 [exp] 103 / 2e-22 ND 56 / 7e-08 Lus10004132 [exp] 97 / 3e-20 AT5G48385 89 / 2e-18 FRIGIDA-like protein (.1) Lus10018975 [exp] 87 / 5e-17 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10003566 [exp] 86 / 5e-17 ND / Lus10042965 [exp] 79 / 1e-14 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [poplar] [flax] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Potri.005G044200.1 pacid=42803718 polypeptide=Potri.005G044200.1.p locus=Potri.005G044200 ID=Potri.005G044200.1.v4.1 annot-version=v4.1 ATGGAGGATGCAATGGATGATTTAAAACTGGTTGACATCAAGAAAGAGAGTTTGCATAAATGTCTCGATCAACTGCATGCACAAGCCTCTTCAATTCTTT CATTCACTCTTGAATGGAAAGATTTGGAGGCTCATTGTGAATCCTCGAAGGCTTTTTTTTTAAGGAAAATGGAAGAACTTGCCTTGCTTGAGAAGAAAAA TGTTGAAATGTTGAAAGTGGTTGAGGAACGTGAGGAGAAGTTTGAAATTAAGGCCAAAAAATATGAGGAGTGTATTTCTGAGCTGCAAAATAAGGAAAAA CAGTTGGGTTTGGTGAAAAATTGGATTCAAGAATGTGATTTGGAGTTGAAAACTCGGCGGGAGGAATTAAATATGGTTCGACAAGAGGTTGAGGATTGTA ATGTGGTGCTCAGTGTGAAAAAAGAGGAATTGAGGTTGGTGCAGACACAGATTGAATCGAAGGAGAGGGATTTGGGTTCGTTGGAAAAGTTACTTGAAGA GCATTGTAGGGAGATTTTTGAGAAAGATGAGAAATTGGGATCTTTACAGAAGTCGGTCGAGGAACGTTTGAAGGAGCTTGAATTCAATGAGAAGGAGGTA GAAAGGGTGAGAAAGTTGATAGCGAATTGTGACCGTGATCTTGAGTTCAAACAGAAGGAGTTACGAAATGTCAGGAACTTGATCAATGATTGTAATAAGG AGCTTTCGTCAAAGGAGATGGATTTGAAAATGTTGCAGGTGAGGAGTTCTGCTAAATTTGTTTCAAACAAGGACGAACTAGATGGAATAAAAAAATCAAT TGAGTGCTCGAAGGAGCTTGATTTGAAAAAGAAGGAGCTGGACAAAACTAAAGAATTGATCCAGGAATGCGTAAAAGAGCTTGATTCTGAAGAGAGGGAA CTGAGTCTAATAAAGAAATCAATTGAGGAGAGCTCAAAAGATTTTGATTCGAGACAGAACCATCTTGGATCAATCAGTGTGTTGATTGATGAATATACAG AAGAACTTGAAGCCAAAGAGAAGCAACATGATGCAGTGAAGAAGTCTATCAGTGTGCGCTCTGCAGAGCTCAAATCAAAAGAAACAGAGTTGAGGTCGAT TGAAGATTCTATCAAAGAGCTCTCAGCAAAGCTTCAACAAAAAGAGGAGAAATTGGATTCAGCTCGACAACATGTGAAACATTGTGCCAGAAAAATTGAA TCAAAAGAGGAGGAGCTCAATAAAATCAAAGGAAGAATGAACACATATGTTAAAGAGCTTGAATCGAGAGAGAGGGAGTTTAATGCTATTCAACTGTCCA TTGAATACCGAAGTGAGGAACTTAAAGGGAAGGAGAGGCAACTGAAATCAGTCCAACTATCGATAGGAGAATGTGAGAAAGAGCTGAAAGCAATGAAGGA ACAGAAAAATTCCATCCAAAAATTAATTTTAGAATGCTCTGAGGAGCTCCAATCAAAAGAGAAGAACCTTATTTTGGCAAGAGAATCTCTCAGAGAATGC TGTGATGATCTCGAATTGAAGAAGGTGCAGCTCGATTCAATTCAAAGATCTTCCCATGAGTCCAACAAAAAGTCTGAAGAAAAAGAGAAATATCTCAATT CACTAGAAAAAACATTAGACGAACGCTTGAAAAATCTTGGAGTGAAGGAGATGCAGTTCGAAGAACGTGTCAATGAGATTGAATTGAAAGAGCAACAATT GCGTTTAATGCAACAATCAGTAGAAAAATACCGTAAAGAAGTGGAGTTGAAAGAGCAGCAATTAGGTAGCAACATCCTTTCTTCGCATGTAAGGGTTGAC CAAACTGAAAATGTTAGAAATCCAAAACATGCGTCATCTTCAGCTTTCCAATTTAATGCCACCACCAGCGAGAGGAGTTCACCAGTGGTAAATGTTTGTG TAAGCGAACATGATCTGATGCACCATGGAGTTTCAGCTGAACCAGCAAAGGTTGTTTTGGATATTGTTCAGAATTGGAAGAAAGGAGTGACAGGATTTGA TGCAAGTGTGAACAGGGATAATGTTGTTCTATTGGAGCAGCTAATGAAAGTTTCGCCAAAAATAAGTCCTCAGGTGAAAGAAGCTGCAACCAAGCTGGCG GTTCTATGGGAAAAAAATATAAGATTGGAGACCGAGGATTCCATGGAGGTTTTGATGTTTTTGCTGTTTTTGGCTGTATATGGATTGGTTTCTTGTTTTA GCAGAGACCGAATTTTAAGACTTGTTAGAGTCATTGCTCAGCAAAAACAGGCTCCTGAAATATTCAAGGCCCTCGGTTTTGCAGATAAAGATCTGGCTCC GGCTTTTATTGAGAATCTTATTGAAGAGAAGCAATATGTGGCTGCTGCTAGATTTAGTCTTGCATTTGAGCTTGTCAGCAGATATCCACCAGAAGTCATC TTGGGAAAAGGCGTGGATGCAATGAATGGTGCCTCGGCCTCCACGGGAAGAAATAATTCAAATGAAGCACAGTGCAAGGCCATTGACAAAGCAATATCTG CTCTAAGTTCTATTTTGGAACTTGTAGCAGATTACAAATATGAATCCAAATATGTGACTGGGGACATTATTCGTTCCATTTCTTACCTGGAAAAGAAAAG GGAAGGCTGGACACGCTCTCTGCAAGCTCCTAACTCCGTGGATCAACCACAACCGCAAGGCAGAAACTATCGAACAGCTGGCATTTCTTGCCCTGCTGAT CAGCCAACTTCTGCTCGCGTTGTCCAACCACAGCTACTGAATCCAAACCTCTGGAATCAACTGCAACAACAAGATATGCGTTTTAGGTCTGATTTTCTGG TTGATATTCCTGGAGTAAGGAATCAGTCCGCTTGTGCTCCCATTATGCAACCACATCTACACAACTCAAACTTCCAGGACCAAGAACAACTGCAAAATAA CAATAAGCGTCCAAGGATAGATCTGTTAGCTGATAGACCACAAGTTACTCAAGATGTTGCAGCTTATGGAGGTGCAACGCAGTTTTTCACTGCTACAAAC CACTTTGGAGCCTCAGACTTGAATGCTCAACAATCAAATATTGCTGGAAGACACAACTGGTACCCCACCTGGCAACAGCGCTGA
AA sequence Show only first row Show all	>Potri.005G044200.1 pacid=42803718 polypeptide=Potri.005G044200.1.p locus=Potri.005G044200 ID=Potri.005G044200.1.v4.1 annot-version=v4.1 MEDAMDDLKLVDIKKESLHKCLDQLHAQASSILSFTLEWKDLEAHCESSKAFFLRKMEELALLEKKNVEMLKVVEEREEKFEIKAKKYEECISELQNKEK QLGLVKNWIQECDLELKTRREELNMVRQEVEDCNVVLSVKKEELRLVQTQIESKERDLGSLEKLLEEHCREIFEKDEKLGSLQKSVEERLKELEFNEKEV ERVRKLIANCDRDLEFKQKELRNVRNLINDCNKELSSKEMDLKMLQVRSSAKFVSNKDELDGIKKSIECSKELDLKKKELDKTKELIQECVKELDSEERE LSLIKKSIEESSKDFDSRQNHLGSISVLIDEYTEELEAKEKQHDAVKKSISVRSAELKSKETELRSIEDSIKELSAKLQQKEEKLDSARQHVKHCARKIE SKEEELNKIKGRMNTYVKELESREREFNAIQLSIEYRSEELKGKERQLKSVQLSIGECEKELKAMKEQKNSIQKLILECSEELQSKEKNLILARESLREC CDDLELKKVQLDSIQRSSHESNKKSEEKEKYLNSLEKTLDERLKNLGVKEMQFEERVNEIELKEQQLRLMQQSVEKYRKEVELKEQQLGSNILSSHVRVD QTENVRNPKHASSSAFQFNATTSERSSPVVNVCVSEHDLMHHGVSAEPAKVVLDIVQNWKKGVTGFDASVNRDNVVLLEQLMKVSPKISPQVKEAATKLA VLWEKNIRLETEDSMEVLMFLLFLAVYGLVSCFSRDRILRLVRVIAQQKQAPEIFKALGFADKDLAPAFIENLIEEKQYVAAARFSLAFELVSRYPPEVI LGKGVDAMNGASASTGRNNSNEAQCKAIDKAISALSSILELVADYKYESKYVTGDIIRSISYLEKKREGWTRSLQAPNSVDQPQPQGRNYRTAGISCPAD QPTSARVVQPQLLNPNLWNQLQQQDMRFRSDFLVDIPGVRNQSACAPIMQPHLHNSNFQDQEQLQNNNKRPRIDLLADRPQVTQDVAAYGGATQFFTATN HFGASDLNAQQSNIAGRHNWYPTWQQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27220			Frigida-like protein (.1)		Potri.005G044200 [exp]	0	1
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190701 [exp]	3.87	0.9026
AT4G02630			Protein kinase superfamily pro...		Potri.005G139500 [exp]	8.24	0.8981
AT1G79670		WAKL22, RFO1	RESISTANCE TO FUSARIUM OXYSPOR...		Potri.001G040000 [exp]	8.48	0.8827
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.018G030000 [exp]	9.53	0.8840
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	10.67	0.8852
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Potri.005G035300 [exp]	12.40	0.8694
AT4G14368			Regulator of chromosome conden...		Potri.008G167500 [exp]	19.74	0.8191
AT5G09790		PDE336, SDG15, ...	SETDOMAIN GROUP 15, PIGMENT DE...		Potri.007G109900 [exp]	20.12	0.8338
AT5G66840			SAP domain-containing protein ...		Potri.003G069700 [exp]	23.04	0.8781
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.001G372300 [exp]	23.23	0.8635	PHB.2

Compare expression of checked genes

Potri.005G044200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.