Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05000 286 / 2e-100 Transport protein particle (TRAPP) component (.1) AT5G58030 42 / 4e-05 Transport protein particle (TRAPP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031000 [exp] 317 / 8e-113 AT3G05000 312 / 1e-110 Transport protein particle (TRAPP) component (.1) Potri.018G110000 [exp] 42 / 4e-05 AT5G58030 342 / 1e-121 Transport protein particle (TRAPP) component (.1) Potri.006G187300 [exp] 42 / 6e-05 AT5G58030 380 / 7e-137 Transport protein particle (TRAPP) component (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004135 [exp] 281 / 5e-98 AT3G05000 292 / 1e-102 Transport protein particle (TRAPP) component (.1) Lus10018981 [exp] 275 / 5e-96 AT3G05000 285 / 5e-100 Transport protein particle (TRAPP) component (.1) Lus10033832 [exp] 272 / 1e-94 AT3G05000 285 / 1e-99 Transport protein particle (TRAPP) component (.1) Lus10001721 [exp] 230 / 2e-76 AT3G05000 241 / 1e-80 Transport protein particle (TRAPP) component (.1) Lus10003634 [exp] 42 / 5e-05 AT5G58030 367 / 3e-131 Transport protein particle (TRAPP) component (.1) Lus10003350 [exp] 42 / 0.0001 AT5G58030 364 / 2e-129 Transport protein particle (TRAPP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [poplar] [flax] HNOX-like PF04051 [poplar] [flax] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Potri.005G044300.1 pacid=42802751 polypeptide=Potri.005G044300.1.p locus=Potri.005G044300 ID=Potri.005G044300.1.v4.1 annot-version=v4.1 ATGGGAAGAGAAGTATCGAAGAGTTGCATGGATGGTCTAGTGACAGAAATGGTGTCATCATACTGCACTCGATTTTACTCTAACAAACCAGAACTCGCTG CCCGCCGCATCGAAGCCATTGGTTATCAAGTAGGCCATCAGCTCTCGGAACGGTACACAATAGAACGGCCTCGTTTTACTGATCATTTGGAGGCAATTAA GTTCATATGCAAAGATTTCTGGTCTGAGTTGTTCAAGAAACAGATTGATAACTTGAAGACTAATCGTAGAGGTACGTTTGTGTTGCAAGATAATAAGTTT CCATGGCTATCACGAATGTCGGGGGATGATCTATCGGTTGAGAATGGAATGGAAGATCCTGAAAGTAAAGGTGCACAAGCAATGAGCATGTATTGCTATT TTCCTTGTGGGATTATAAGGGGTGCGCTTTCGAATCTGGGGATTCCTTGTGCTGTTTCTGCTGATATTTCCAGTCTTCCCGCGTGTTCATTTGTGATCAG TGTCAAGGCTTGA
AA sequence Show only first row Show all	>Potri.005G044300.1 pacid=42802751 polypeptide=Potri.005G044300.1.p locus=Potri.005G044300 ID=Potri.005G044300.1.v4.1 annot-version=v4.1 MGREVSKSCMDGLVTEMVSSYCTRFYSNKPELAARRIEAIGYQVGHQLSERYTIERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNRRGTFVLQDNKF PWLSRMSGDDLSVENGMEDPESKGAQAMSMYCYFPCGIIRGALSNLGIPCAVSADISSLPACSFVISVKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05000			Transport protein particle (TR...		Potri.005G044300 [exp]	0	1
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Potri.002G151500 [exp]	5.00	0.7822
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.004G219100 [exp]	6.24	0.8249
AT2G25310			Protein of unknown function (D...		Potri.018G024600 [exp]	11.22	0.8120
AT3G48030			hypoxia-responsive family prot...		Potri.015G073300 [exp]	18.76	0.7750
AT4G19045			Mob1/phocein family protein (....		Potri.001G132700 [exp]	18.97	0.8172
AT5G53650			unknown protein		Potri.015G006500 [exp]	21.02	0.8248
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.002G034200 [exp]	26.83	0.7636	Pt-RER1.5
AT1G49140			Complex I subunit NDUFS6 (.1)		Potri.012G056900 [exp]	29.24	0.8207
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.006G110800 [exp]	29.29	0.7779	PAA1.3
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Potri.010G164300 [exp]	32.71	0.8046	VTI12.2

Compare expression of checked genes

Potri.005G044300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.