Plant FIBer expression Database

CUZN-SOD.1 (Potri.005G044400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CUZN-SOD.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08830 266 / 4e-93 CSD1 copper/zinc superoxide dismutase 1 (.1.2)
AT2G28190 201 / 1e-66 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1)
AT5G18100 199 / 2e-66 CSD3 copper/zinc superoxide dismutase 3 (.1.2)
AT1G12520 57 / 1e-10 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G031100
[exp]
281 / 5e-99 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2)
Potri.013G056900
[exp]
214 / 3e-72 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2)
Potri.019G035800
[exp]
212 / 2e-71 AT5G18100 237 / 3e-81 copper/zinc superoxide dismutase 3 (.1.2)
Potri.004G216700
[exp]
205 / 4e-68 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1)
Potri.009G005100
[exp]
198 / 2e-65 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1)
Potri.003G118400
[exp]
58 / 2e-10 AT1G12520 393 / 8e-138 copper chaperone for SOD1 (.1.2.3)
Potri.001G113800
[exp]
56 / 7e-10 AT1G12520 377 / 2e-131 copper chaperone for SOD1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004139
[exp]
273 / 7e-96 AT1G08830 253 / 4e-88 copper/zinc superoxide dismutase 1 (.1.2)
Lus10001719
[exp]
274 / 1e-94 AT1G08830 250 / 6e-85 copper/zinc superoxide dismutase 1 (.1.2)
Lus10016155
[exp]
202 / 9e-67 AT2G28190 308 / 1e-107 copper/zinc superoxide dismutase 2 (.1)
Lus10010651
[exp]
202 / 3e-65 AT5G18100 228 / 9e-75 copper/zinc superoxide dismutase 3 (.1.2)
Lus10021410
[exp]
193 / 4e-63 AT2G28190 306 / 5e-107 copper/zinc superoxide dismutase 2 (.1)
Lus10013615
[exp]
181 / 3e-57 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2)
Lus10006686
[exp]
64 / 1e-12 AT1G12520 393 / 6e-138 copper chaperone for SOD1 (.1.2.3)
Lus10007031
[exp]
64 / 2e-12 AT1G12520 399 / 5e-140 copper chaperone for SOD1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00080 Sod_Cu Copper/zinc superoxide dismutase (SODC)
Representative CDS sequence
>Potri.005G044400.5 pacid=42802374 polypeptide=Potri.005G044400.5.p locus=Potri.005G044400 ID=Potri.005G044400.5.v4.1 annot-version=v4.1
ATGGTGAAGGCTGTAGCTGTTCTTAATAGCAGTGAAGGTGTGAGTGGCACCATCTTCTTTACCCAAGAAGGAGATGGCCCAACTACTGTAACTGGAAACC
TTTCTGGTCTTAAGCCAGGCCTTCATGGCTTCCACGTCCATGCCCTTGGAGACACCACAAATGGCTGCATGTCAACTGGGCCGCATTTTAATCCTGTAGG
CAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTGGGAAATGTCACTGTTGGTGATGATGGCACTGCTACTTTCACAATCATTGAC
AAACAGATTCCTCTTACTGGACCACATTCCATTATTGGAAGGGCTGTTGTTGTTCATGGAGATCCTGATGATCTTGGCAAGGGAGGACATGAACTCAGCA
AAACCACTGGTAATGCTGGTGGCAGAGTAGCATGCGGTATTATTGGTCTGCAAGGTTGA
AA sequence
>Potri.005G044400.5 pacid=42802374 polypeptide=Potri.005G044400.5.p locus=Potri.005G044400 ID=Potri.005G044400.5.v4.1 annot-version=v4.1
MVKAVAVLNSSEGVSGTIFFTQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDENRHAGDLGNVTVGDDGTATFTIID
KQIPLTGPHSIIGRAVVVHGDPDDLGKGGHELSKTTGNAGGRVACGIIGLQG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G08830 CSD1 copper/zinc superoxide dismuta... Potri.005G044400
[exp]
0 1 CUZN-SOD.1
AT1G80160 GLYI7 glyoxylase I 7, Lactoylglutath... Potri.003G009000
[exp]
1.73 0.8019
AT3G27090 DCD (Development and Cell Deat... Potri.001G330300
[exp]
2.44 0.7658
AT4G36195 Serine carboxypeptidase S28 fa... Potri.007G015300
[exp]
5.65 0.7218
AT4G33625 unknown protein Potri.017G043200
[exp]
8.71 0.6991
AT2G43070 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PE... Potri.002G232200
[exp]
17.66 0.6847
AT1G60710 ATB2 NAD(P)-linked oxidoreductase s... Potri.014G147700
[exp]
18.57 0.6873 Pt-ATB2.1
AT4G19180 GDA1/CD39 nucleoside phosphata... Potri.015G079900
[exp]
18.65 0.7123
AT5G44730 Haloacid dehalogenase-like hyd... Potri.003G154500
[exp]
21.02 0.7008
AT1G08830 CSD1 copper/zinc superoxide dismuta... Potri.013G031100
[exp]
22.58 0.6823 CUZN-SOD.2
AT3G24160 PMP putative type 1 membrane prote... Potri.003G178400
[exp]
27.56 0.7408 Pt-PMP.2

Potri.005G044400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.