Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08630 437 / 3e-142 unknown protein AT3G48860 384 / 3e-125 unknown protein AT5G13260 358 / 8e-116 unknown protein AT5G23700 343 / 2e-109 unknown protein AT4G25070 345 / 4e-108 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105400 [exp] 411 / 6e-136 AT3G48860 546 / 0.0 unknown protein Potri.001G065800 [exp] 400 / 8e-132 AT3G48860 528 / 0.0 unknown protein Potri.003G164100 [exp] 374 / 2e-121 AT5G13260 529 / 0.0 unknown protein Potri.015G104600 [exp] 341 / 2e-108 AT3G48860 452 / 3e-153 unknown protein Potri.013G031151 [exp] 54 / 7e-09 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004138 [exp] 456 / 6e-151 AT4G08630 464 / 2e-152 unknown protein Lus10001720 [exp] 450 / 3e-148 AT4G08630 471 / 5e-155 unknown protein Lus10036015 [exp] 401 / 8e-132 AT3G48860 675 / 0.0 unknown protein Lus10032546 [exp] 397 / 3e-131 AT3G48860 595 / 0.0 unknown protein Lus10043194 [exp] 398 / 8e-131 AT3G48860 684 / 0.0 unknown protein Lus10016721 [exp] 393 / 6e-129 AT3G48860 674 / 0.0 unknown protein Lus10001801 [exp] 380 / 4e-124 AT5G13260 591 / 0.0 unknown protein Lus10002574 [exp] 358 / 7e-115 AT5G13260 566 / 0.0 unknown protein Lus10024669 [exp] 45 / 0.0002 AT1G63910 260 / 2e-82 myb domain protein 103 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G044600.2 pacid=42802972 polypeptide=Potri.005G044600.2.p locus=Potri.005G044600 ID=Potri.005G044600.2.v4.1 annot-version=v4.1 ATGGATCGTAGGATGAAGCCAGTGTATCTAAGGCAAATTAGCATAGAAGGAACGCCGAGGACACCATCATCACCATCCATGTCCCCACTGCGTATGCACC ATGCTCGGTCAGGATCAGCTGGGGTGGGTAACAACATGAAGAAAGCACAAACTAAGGCTGCGGCGCAGAGGCTTGCGCAGGTGATGTCACACCAGACAGC TGATGATGATGATGATGATGAAGACGATGATCTTTCGTATGATTATCAAGCAAGCGGCATTGGAAGCATTGGACTTGCTGGTGGAAGGAGAATGCAGCCT CGGTCGCCAATGACCAAATCTGCAGCTCAAGTTCGTGTGCCGGCAAAGACATACCGACCAGTTGATGAGGACTTGCAGACCAAACCTGCAGCTCAAGTTC GTGTTCCGGCAAAGACATACCGACCAGTTGATGAGGTCCTGCAGACCAAACCTGCAGCTCAAGTTCGTGTGCCGGGAAAGACATATCAACCTGTGGATGA CGACAGTGATAATGACGAGCTTATACATGATTATGGCTCCAGGGCTAGTGGGTTGACCATCGGACGTGCTGGTGGGAAGTCAATGCGATCACAGTCTCCT GCGGTAGTTCGTACCGGCCGACCTGGACAACCTTCATCTACACAGTCAACAACCAGTAGTCGATCGCCTTTATCTGTCAATACAGTGGAACAACCATCAT CAGCACAAGTGTCTTTAGCAGCCCCGGCATCCCAGCCCACAAACTCTGTAGAACAACCGGTATCTGCCCGTTCCAGAATGGTGGGACGACCATCCTTCAA TTCCATGGACCAACCTCTATCTCTTCGTTCTGGTCGATCATCTACTAACTCTGTAGAACAACCTCCATCTGCTCGTTCTACTTCAGCTACCAGCCTCGGC ATCAAGACAGTTCCCATACCCTCTAGTGTAACTATATCACTAAGGCCTGTCTCTCCTATGGCTTCATCAGATCACCCGAAGGATAGAAGGCTGTCATTAG ACTGGGGAAGTATGAACTTAAGAGATTCTGGCATTCAGCATTCAACTTCTGCTTTACAAGATGAGATTGACATGCTACAGGAAGAAAATGAAAGTTTACT TGACAAGCTTCGGCTTGCGGCGGAGAAGTATGAAGAGGCAGAGGCAAGAGCTCGGCAGCTCGAGAGACAGGTTGCTACTCTAGGTGAAGGTGTAACCTTA GAAGCCAAACTTTTAAGCAGAAAGGAAGCAGCTCTGCTACAAAGGGAGGCTGCTTTGAAAGTAGCAGAACAAACTAGTAAACCTGAAGAGGCCCTTCGGT TGGAAGCTGAGGTTGCTAAGGATGAGGCCGCATCTGCGATTGAGCAACTCCGTGAAGTTCAGTCTGAAGCTAAGTCACTCCAAAATATGACACAGCGAAT GATACTGACTCAGGAAGAGATGGAAGAAGTTGTTCTAAAGAGGTGCTGGCTTGCACGATATTGGATCTTGTGTGTTAAACATGGTATTCTCGCAGAGATT GCTGGAGCAAGATATGAGTACTGGTCATCCTTTGCTCCTCTACCTGTTGAAGTTGTATTATCCGCTGGACAGAGAGCTAAAGATGAGAATTCATCTGTAA ATGATGACGCAGAAGAAAGAGAGAGAGTTCTAAAAGAAGGAAGTGAACTTTCTGGAGATGGAAATATTGAGAGCATGCTTCTAGTTGAGAAAGGCCTGCG CGAACTGGCTTCACTAAAGGTAGGGGAAGCAGTGGCTCTTGCCATGGCTCAGCAACGTCGGACGAATTTTATGAAATCAGATGAAATTAAACTAGCCGGC GATGGAAATCTTGAAGCATTTGAATTGAGCCAGGAGGAGTCCGAAGACGTGCGATTCAAGCAGGCCTGGCTTACATATTTCTGGAGAAGAGCCAAAAACC ATGGTCTGGAACCCGACATAGCAGAAGAACGTTTGCAATTCTGGATCAATCACAGCAGTCGGTCTTCCTCGTCACACGATGCAGTCGATGTTGAGCGCGG ACTCATGGAGCTCAGGAAATTAGGCATTGAGAACCAGCTATGGCAAGCATCTCGAAGAGGGCTCGAGGTTGACTCCAACTCCAAGGCCAATCTTGAGTCC GACTTCTGA
AA sequence Show only first row Show all	>Potri.005G044600.2 pacid=42802972 polypeptide=Potri.005G044600.2.p locus=Potri.005G044600 ID=Potri.005G044600.2.v4.1 annot-version=v4.1 MDRRMKPVYLRQISIEGTPRTPSSPSMSPLRMHHARSGSAGVGNNMKKAQTKAAAQRLAQVMSHQTADDDDDDEDDDLSYDYQASGIGSIGLAGGRRMQP RSPMTKSAAQVRVPAKTYRPVDEDLQTKPAAQVRVPAKTYRPVDEVLQTKPAAQVRVPGKTYQPVDDDSDNDELIHDYGSRASGLTIGRAGGKSMRSQSP AVVRTGRPGQPSSTQSTTSSRSPLSVNTVEQPSSAQVSLAAPASQPTNSVEQPVSARSRMVGRPSFNSMDQPLSLRSGRSSTNSVEQPPSARSTSATSLG IKTVPIPSSVTISLRPVSPMASSDHPKDRRLSLDWGSMNLRDSGIQHSTSALQDEIDMLQEENESLLDKLRLAAEKYEEAEARARQLERQVATLGEGVTL EAKLLSRKEAALLQREAALKVAEQTSKPEEALRLEAEVAKDEAASAIEQLREVQSEAKSLQNMTQRMILTQEEMEEVVLKRCWLARYWILCVKHGILAEI AGARYEYWSSFAPLPVEVVLSAGQRAKDENSSVNDDAEERERVLKEGSELSGDGNIESMLLVEKGLRELASLKVGEAVALAMAQQRRTNFMKSDEIKLAG DGNLEAFELSQEESEDVRFKQAWLTYFWRRAKNHGLEPDIAEERLQFWINHSSRSSSSHDAVDVERGLMELRKLGIENQLWQASRRGLEVDSNSKANLES DF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08630			unknown protein		Potri.005G044600 [exp]	0	1
AT1G57775			Protein of unknown function (D...		Potri.004G115251 [exp]	10.19	0.5837
AT1G57775			Protein of unknown function (D...		Potri.004G115351 [exp]	11.40	0.5837
					Potri.010G033266 [exp]	12.48	0.5837
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Potri.006G080400 [exp]	14.96	0.5740
AT1G64870			unknown protein		Potri.014G054900 [exp]	19.20	0.5621
					Potri.002G235550 [exp]	25.51	0.4891
					Potri.002G209988 [exp]	32.75	0.4607
					Potri.001G426850 [exp]	35.09	0.5240
AT1G43760			DNAse I-like superfamily prote...		Potri.017G066550 [exp]	37.08	0.4328
AT1G43760			DNAse I-like superfamily prote...		Potri.004G128961 [exp]	49.90	0.4449

Compare expression of checked genes

Potri.005G044600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.