Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05010 432 / 1e-153 Protein of unknown function, transmembrane-40 (.1) AT5G27210 404 / 1e-142 Protein of unknown function, transmembrane-40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031200 [exp] 549 / 0 AT3G05010 431 / 1e-153 Protein of unknown function, transmembrane-40 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033835 [exp] 465 / 1e-166 AT3G05010 420 / 4e-149 Protein of unknown function, transmembrane-40 (.1) Lus10018985 [exp] 459 / 3e-164 AT3G05010 417 / 9e-148 Protein of unknown function, transmembrane-40 (.1) Lus10040523 [exp] 315 / 1e-107 AT3G05010 327 / 1e-112 Protein of unknown function, transmembrane-40 (.1) Lus10018984 [exp] 231 / 3e-76 AT5G27210 206 / 9e-67 Protein of unknown function, transmembrane-40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10160 [poplar] [flax] Tmemb_40 Predicted membrane protein
Representative CDS sequence Show only first row Show all	>Potri.005G044700.1 pacid=42803448 polypeptide=Potri.005G044700.1.p locus=Potri.005G044700 ID=Potri.005G044700.1.v4.1 annot-version=v4.1 ATGCCCAGTATTCATAGAAAGGGGCTTGTGTTAGAAATCCCTATCTCACAAAACCCTAATTCAACTCTCAAAGAAGGGACCTTTGTTGGGCCAAGTCTCT TCAATTGGCTCGTTGAATGTCATGGCTTTTTGCATAATGCGATTTTGATCTTGACTTCTCTTGCTTTTGTAATCTATTTGGCATTTCAAGCTAAAAAGAG CTTTAGGAAGCTTTCAAATGGGAGATCATCTATAATGATTGCCTATTATTGCAGTCTTTGGCTTGTTAGCTTGCTTAATTTTGCTTGGTCTTGCTTTCAG GCATGGGAATGCACTCCTGGAAAAGAATTATCGTGGAATATCTTATCATTGTTTACAACATCAGGAATGCTGTTTCTGGAAGTAAGCTTGATCGCCTTTT TACTGCAAGGAAATTATGCGAGTGGATTGGAAGATTTGACACAACCTTTTGGTGTCTCAGCCCTCATTGTTGGTTTGGATATATTCCTCAAGGCTGTATA CCTTTTTGGATTTGGGATTCCTCTGTTCATTGATAGCAGTGACCATTCCCATCGCATGAAGTGGAGCTTGTGGGTTATCCACAGACTTGTGCTGACTGCT GTTTATGGGTTGATAATGTTCATGTATCATTCCAAGTGGAGGGAGAGGCTACCCGCAAGACCTGCGTTCTACAATTATATTGCCATTATGTTCATCTTGA ATGCACTGGCACTGTTTGCTTGTGCACTTACTGGACATGGGGCTGGTTTTGGTTACTGGTTGTATGGGATCACAATTGTATGCTACCATGCCTTTTACCT TCCTCTTCTGTATGTAACCTTTTTAGCAGACTTTTTCCAGGAGGAAGGTTTGAATCTGGAGAATGTATACTATTCAGAGATGAAAGATGCTGGTTTCTTT GATGATGACTGGGACTGA
AA sequence Show only first row Show all	>Potri.005G044700.1 pacid=42803448 polypeptide=Potri.005G044700.1.p locus=Potri.005G044700 ID=Potri.005G044700.1.v4.1 annot-version=v4.1 MPSIHRKGLVLEIPISQNPNSTLKEGTFVGPSLFNWLVECHGFLHNAILILTSLAFVIYLAFQAKKSFRKLSNGRSSIMIAYYCSLWLVSLLNFAWSCFQ AWECTPGKELSWNILSLFTTSGMLFLEVSLIAFLLQGNYASGLEDLTQPFGVSALIVGLDIFLKAVYLFGFGIPLFIDSSDHSHRMKWSLWVIHRLVLTA VYGLIMFMYHSKWRERLPARPAFYNYIAIMFILNALALFACALTGHGAGFGYWLYGITIVCYHAFYLPLLYVTFLADFFQEEGLNLENVYYSEMKDAGFF DDDWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05010			Protein of unknown function, t...		Potri.005G044700 [exp]	0	1
AT1G32460			unknown protein		Potri.001G145066 [exp]	1.00	0.8842
AT1G19310			RING/U-box superfamily protein...		Potri.002G133000 [exp]	2.44	0.8567
AT5G19860			Protein of unknown function, D...		Potri.003G217200 [exp]	4.89	0.8362
AT5G65280		GCL1	GCR2-like 1 (.1)		Potri.005G072500 [exp]	9.16	0.8054
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Potri.001G151800 [exp]	11.83	0.7993	ATBI.1
AT5G19070			SNARE associated Golgi protein...		Potri.008G202600 [exp]	11.83	0.8063
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Potri.002G168900 [exp]	12.36	0.8109
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.002G226900 [exp]	13.56	0.8299
AT3G24160		PMP	putative type 1 membrane prote...		Potri.003G178400 [exp]	14.00	0.8154	Pt-PMP.2
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Potri.003G087800 [exp]	14.49	0.7978	Pt-TOM2.1

Compare expression of checked genes

Potri.005G044700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.