Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34970 969 / 0 Trimeric LpxA-like enzyme (.1) AT4G18300 831 / 0 Trimeric LpxA-like enzyme (.1) AT3G02270 732 / 0 Trimeric LpxA-like enzyme (.1) AT2G39770 56 / 4e-08 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 53 / 4e-07 Glucose-1-phosphate adenylyltransferase family protein (.1) AT5G19485 52 / 2e-06 transferases;nucleotidyltransferases (.1) AT3G13630 43 / 0.0002 unknown protein AT5G36230 44 / 0.0004 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198800 [exp] 58 / 1e-08 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 58 / 1e-08 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.006G090300 [exp] 57 / 3e-08 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 54 / 2e-07 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.009G066400 [exp] 51 / 2e-06 AT5G19485 655 / 0.0 transferases;nucleotidyltransferases (.1) Potri.013G085600 [exp] 47 / 3e-05 AT5G36230 687 / 0.0 ARM repeat superfamily protein (.1) Potri.019G053600 [exp] 45 / 0.0001 AT5G36230 694 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033841 [exp] 1005 / 0 AT2G34970 880 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10018991 [exp] 966 / 0 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10024356 [exp] 57 / 2e-08 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10004699 [exp] 54 / 2e-07 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 54 / 2e-07 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10036081 [exp] 54 / 2e-07 AT5G19485 638 / 0.0 transferases;nucleotidyltransferases (.1) Lus10026802 [exp] 54 / 4e-07 AT5G19485 633 / 0.0 transferases;nucleotidyltransferases (.1) Lus10030156 [exp] 52 / 9e-07 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10010879 [exp] 47 / 5e-06 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10029667 [exp] 46 / 4e-05 AT5G36230 320 / 1e-109 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [poplar] [flax] HEXAPEP PF00132 [poplar] [flax] Hexapep Bacterial transferase hexapeptide (six repeats) CL0110 [poplar] [flax] GT-A PF00483 [poplar] [flax] NTP_transferase Nucleotidyl transferase CL0020 [poplar] [flax] TPR PF02020 [poplar] [flax] W2 eIF4-gamma/eIF5/eIF2-epsilon
Representative CDS sequence Show only first row Show all	>Potri.005G045200.1 pacid=42804403 polypeptide=Potri.005G045200.1.p locus=Potri.005G045200 ID=Potri.005G045200.1.v4.1 annot-version=v4.1 ATGCCTCCACAGAGAAAAGGTGCGGCAGCTAGGGTTTCGGAGGATACAGAGGACCTCACCCGTCACCCGCTCCAAGCCATCCTCTTAGCCGATAGCTTTG CCACCAAATTCCGTCCAATCACACTCGAACGCCCTAAAGTGTTGCTGCCGTTGGTGAATGTGCCGATGATAGATTACACATTGGCGTGGCTAGAATCTGC TGGAGTTGAGGAGGTTTTTGTTTTCTGTTGCGCGCATTCTAAACAAGTTATCGAGTATTTGGAGAAATCCGAGTGGATTTTGCAGCCGAATTTCTCCGTT GTAACTATCGAGTCTCATAATTCTGTTAGCGCTGGCGACGCTCTGCGATTGATCTACGAGCGCAATGTGATAAATGGAGATTTTGTACTTATTAGTGGGG ATACAGTGAGCAACATGTCTCTCACACAAGTGATTCAAGAACATAAAGAGAGAAGGAAGAAAGACAGTAATGCTGTGATGACTATGGTTATTAAACAGTC GAAACTATCTCCGATTACCCATCAATCACGGCTTGGTACTGACGAGCTTTTTCTGGCAATAGATCCTCAGACAAAACAGCTTCTTTTCTACGAGGAAAAG ACCGACAACTTGAGAGGGATTATACCTCTTGATAATGCATTGCTTGGTGATAATCCTTCCATTTGCCTCCACAATGACAAGCAGGATTGTTATATTGATA TCTGCTCCCAGGAAGTTCTTAGTCTTTTCACTGACAACTTTGACTATCAACACCTACGCCGTCATTTTGTAAAGGGATTGCTGGTTGACGATATTATGGG CTACAAAATATTCACTCATGAAATTCACTCAAGTTATGCTGCTAGGATTGATAACTATCGAAGCTATGACACTATCAGTAAGGACATAATTCAAAGGTGG ACTTACCCATTTGTACCAGATGTGATGTTTTCTGGAAATTCTGCTACTCATCTTGAAAGAGAAGGGATGTACCGAGCATCAGAAATTGAGCAATCACGTT CTGCACGTATCGGTCCTTTTACTGTTATTGGAAAAGGCACTAGAATTGGGAACAACTCCAATATTTCGAATTCTGTCATTGGGAAAGGGTGTTCAATTGG ATCAAATGTTTCAATAACAGGTTCCTATATATGGGATAGCGTCACTATTGAAGATGGCTGTGACATAAGGCATGCAATAATATGTGATGGAGTGGTAATA AAATCAGGAGCAGCGTTGGAACCTGGCGTGGTATTGTCTTTCAAGGTTGTGATTGGACAGCAGTTTATTGTCCCTTCCTATTCAAAGGTGTCTTTATATC AGCAGCCAACTGTGGAAGATAGTGATGAAGAATTGGAGTATGCTGATAATAGCAGTGGAACCGTAGATTCTTCAATTACATGTACTATGGATACGTTAAA TAGGGAAATGATGTCTGAGACGCCTGCATCACAGCTCGGGCCTGGTGGTGTTGGCCATGTTTGGTCAATATGTGAGGGAGGTCACGAGGAAGAATGGAGA CATTCAGTTGCACCCATTCCTGCTGATAAACTTGCTGAGGCCACTCAATCTTTGGAGGATGATTTGGAATTCTTAAATCTAGATGGAAATGCTCTCTCAA CTTCTGGGGAGTTGAAGCCTGGTCGTAATGGCACTGATTCTGAAGACGATGATGCTGAAGATTCTAGAGATGATTCCATTTACTATGAGAAAGAGGTTGA AGCAACTTTTTTGAGGGCTGTTAATGAGAATATCAAAGTACCTGATGTAATTCTTGAAATGAACTCTCTGCGGTTGTCATACAACATGACATCCGCAGAC TGTGCTGGGGCAATATTTTATGCAATGATGAAACAGGCGTTAGAGATTCCACATGCTACTGCTGGTGAATTGCGCAAAAATGCAGCAAGCATTATAGATG CATGGAACAACCTTCTAAAGTTCTATTCAAAGGAAATAGATGACCAGATTGAAGTGATAATGAAATTTGAAGAAATGTGTCTGGAATCTGTTAAGGAGTT CTCACCACATTTTTCCCAGATTTTGCATATTTTATATGATAAAGACATTTTAGAAGAGGATGCCATATTGAGGTGGGCTGATGAGAAAAAAGATGCTGAA GAATCAGATAAAGTTTTTGTCAAGCAGTCAGAAAAACTCATTCAATGGTTGAGAGAGGCATCTGAAGAAGAAGATTGA
AA sequence Show only first row Show all	>Potri.005G045200.1 pacid=42804403 polypeptide=Potri.005G045200.1.p locus=Potri.005G045200 ID=Potri.005G045200.1.v4.1 annot-version=v4.1 MPPQRKGAAARVSEDTEDLTRHPLQAILLADSFATKFRPITLERPKVLLPLVNVPMIDYTLAWLESAGVEEVFVFCCAHSKQVIEYLEKSEWILQPNFSV VTIESHNSVSAGDALRLIYERNVINGDFVLISGDTVSNMSLTQVIQEHKERRKKDSNAVMTMVIKQSKLSPITHQSRLGTDELFLAIDPQTKQLLFYEEK TDNLRGIIPLDNALLGDNPSICLHNDKQDCYIDICSQEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIHSSYAARIDNYRSYDTISKDIIQRW TYPFVPDVMFSGNSATHLEREGMYRASEIEQSRSARIGPFTVIGKGTRIGNNSNISNSVIGKGCSIGSNVSITGSYIWDSVTIEDGCDIRHAIICDGVVI KSGAALEPGVVLSFKVVIGQQFIVPSYSKVSLYQQPTVEDSDEELEYADNSSGTVDSSITCTMDTLNREMMSETPASQLGPGGVGHVWSICEGGHEEEWR HSVAPIPADKLAEATQSLEDDLEFLNLDGNALSTSGELKPGRNGTDSEDDDAEDSRDDSIYYEKEVEATFLRAVNENIKVPDVILEMNSLRLSYNMTSAD CAGAIFYAMMKQALEIPHATAGELRKNAASIIDAWNNLLKFYSKEIDDQIEVIMKFEEMCLESVKEFSPHFSQILHILYDKDILEEDAILRWADEKKDAE ESDKVFVKQSEKLIQWLREASEEED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34970			Trimeric LpxA-like enzyme (.1)		Potri.005G045200 [exp]	0	1
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Potri.001G334200 [exp]	3.46	0.8506
AT3G44330			unknown protein		Potri.009G160400 [exp]	4.89	0.8949
AT1G18700			DNAJ heat shock N-terminal dom...		Potri.017G112200 [exp]	7.34	0.8421
AT3G62360			Carbohydrate-binding-like fold...		Potri.002G194000 [exp]	11.66	0.8572
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.007G118300 [exp]	13.26	0.8194
AT1G16520			unknown protein		Potri.005G097600 [exp]	17.14	0.8688
AT1G55915			zinc ion binding (.1)		Potri.011G092900 [exp]	17.32	0.8103
AT2G20420			ATP citrate lyase (ACL) family...		Potri.002G259600 [exp]	18.49	0.8735
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.013G082200 [exp]	21.49	0.8394	CESA3.1
AT5G61970			signal recognition particle-re...		Potri.015G105600 [exp]	21.97	0.8395

Compare expression of checked genes

Potri.005G045200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.