Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54610 770 / 0 Protein kinase superfamily protein (.1.2.3) AT3G05050 690 / 0 Protein kinase superfamily protein (.1) AT5G50860 632 / 0 Protein kinase superfamily protein (.1) AT1G53050 611 / 0 Protein kinase superfamily protein (.1) AT1G09600 563 / 0 Protein kinase superfamily protein (.1) AT1G74330 537 / 0 Protein kinase superfamily protein (.1.2) AT1G71530 516 / 7e-180 Protein kinase superfamily protein (.1.2) AT1G18670 525 / 8e-180 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G03740 520 / 3e-178 Protein kinase superfamily protein (.1.2) AT1G57700 518 / 2e-177 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032200 [exp] 1039 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 827 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 676 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 673 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 622 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 619 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 609 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 565 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.012G067800 [exp] 558 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004144 [exp] 880 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 874 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012805 [exp] 823 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 804 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 608 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 608 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 548 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10015727 [exp] 547 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10021642 [exp] 543 / 0 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10028890 [exp] 540 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G045500.1 pacid=42805116 polypeptide=Potri.005G045500.1.p locus=Potri.005G045500 ID=Potri.005G045500.1.v4.1 annot-version=v4.1 ATGGGGTGTGTTCTTGGGAGAGAGGTATCTTCGGGCATAGTTTCAGAGTCTAAAGAGGTTAAGAACTCAAGAGTTGAATCCAAGAGGAAAGTAGAAGATG TTTCAGTGACAAAGACCGATACTACTAGCAGTGTTGTTGAGATTCAAAATGAGGAAACTCAGGAGGAGAAAGTTGATGGGGATAAAAAACCTAGGGGAGA GAGGAGGAGGTCAAGGCCAAACTATAAGCCGAGTAACCTGCCCGGACAAATGCGTGGTGATCAGGTTGCAGCTGGGTGGCCACCCTGGCTGTCGGCAGTC TGTGGAGAGGCACTAAATGGATGGATTCCAAGGAGGGCAGACACATTTGAGAAGATTGACAAGATTGGATCAGGTACATATAGTAATGTGTACAAAGCTA GAGATCTATTGACAGGGAAAGTTGTTGCCCTTAAAAAGGTTCGTTTTGATAATTTGGAACCAGAGAGTGTGAAGTTTATGGCGAGAGAAATCATCATTTT GCGAAGATTGAATCATCCTAATGTTGTAAAGTTGGAAGGTTTAGTTACTTCCAGGATGTCATGTAGTTTGTACCTGGTATTTGAGTACATGGAGCATGAT TTAGCTGGACTTGCTGCCAGCCCTGCAGTAAAATTTACAGAGGCTCAGGTTAAATGTTACATGCATCAACTATTATCTGGACTTGAGCATTGTCACAAAC GCGGTGTGCTTCATCGTGACATTAAAGGATCAAATCTTTTGATTGACAATGAAGGAATACTTAGGATTGCTGATTTTGGATTGGCGTCTTTCTTTGATCC TAATAACAAGCATCCAATGACAAGCCGGGTTGTTACTCTGTGGTATCGGCCTCCTGAGCTTCTTCTTGGGGCTACTGACTATGGTGTTAGCATTGACCTG TGGAGTGCAGGCTGTATATTGGCTGAGTTACTGGCTGGGAAGCCCATTATGCCTGGTCGTACAGAGGTAGAGCAACTACATAAGATATATAAGCTATGTG GTTCGCCATCAGATGAATACTGGAAAAAATCGAGGTTGCCAAATGCAACTTTGTTTAAGCCTCGAGAGCCTTACAAAAGATGCATAAGAGAGACATTTAA AGATTTTCCACCATCATCACTTCCCCTCATCGAAACTCTTCTTGCAATTGATCCAGTGGAACGTCAGACAGCCACAGCTGCCCTAAAGAGTGAATTCTTC ACAACAGAACCTTATGCTTGTGAACCTTCTAGTCTCCCAAAATATCCCCCAAGTAAGGAGATGGATGCTAAACGACGAGATGATGAAGCTCGAAGACTAA GAGCTGCCAGCAAAGCCCAAGGTGATGCTGGAAAGAAAACGCGAACACGTGAACGTCATGCTAGGGCAATGCCAGCTCCTGATGCCAATGCAGAGCTCCA GTCCAATATTGATAGAAGGCGCCTAATTAACCATGCAAATGCAAAAAGCAAGAGTGAAAAGTTTCCCCCACCACATCAGGATGGAGCTCTTGGTTATACT TTAGGATCTTCTCACCACATTGATCCTGCGCTTGTTCCTCCTGATGTGCCATTTAGTACTACCTCATTCACATACTCAAAGGAGCCAATACAAACTTGGT CTGGCCCGTTGGTTGACCCTGCTGGTGTCGGTGCTCCGAGGCGAAAGAAGAAGAATACAGGTGATGCACGAGGATCGTCAAATCTGCCAACTGGAAAAGA TAAAAGCAGAGATACTCAGTTAAAAGGAAAAAAGAGCATGGCTTAA
AA sequence Show only first row Show all	>Potri.005G045500.1 pacid=42805116 polypeptide=Potri.005G045500.1.p locus=Potri.005G045500 ID=Potri.005G045500.1.v4.1 annot-version=v4.1 MGCVLGREVSSGIVSESKEVKNSRVESKRKVEDVSVTKTDTTSSVVEIQNEETQEEKVDGDKKPRGERRRSRPNYKPSNLPGQMRGDQVAAGWPPWLSAV CGEALNGWIPRRADTFEKIDKIGSGTYSNVYKARDLLTGKVVALKKVRFDNLEPESVKFMAREIIILRRLNHPNVVKLEGLVTSRMSCSLYLVFEYMEHD LAGLAASPAVKFTEAQVKCYMHQLLSGLEHCHKRGVLHRDIKGSNLLIDNEGILRIADFGLASFFDPNNKHPMTSRVVTLWYRPPELLLGATDYGVSIDL WSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSRLPNATLFKPREPYKRCIRETFKDFPPSSLPLIETLLAIDPVERQTATAALKSEFF TTEPYACEPSSLPKYPPSKEMDAKRRDDEARRLRAASKAQGDAGKKTRTRERHARAMPAPDANAELQSNIDRRRLINHANAKSKSEKFPPPHQDGALGYT LGSSHHIDPALVPPDVPFSTTSFTYSKEPIQTWSGPLVDPAGVGAPRRKKKNTGDARGSSNLPTGKDKSRDTQLKGKKSMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54610			Protein kinase superfamily pro...		Potri.005G045500 [exp]	0	1
AT4G24290			MAC/Perforin domain-containing...		Potri.001G305600 [exp]	6.85	0.6985
AT1G76140			Prolyl oligopeptidase family p...		Potri.005G247400 [exp]	16.09	0.6308
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.014G099000 [exp]	19.36	0.6473
AT5G28850			Calcium-binding EF-hand family...		Potri.019G019500 [exp]	23.87	0.5968
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.003G005700 [exp]	35.15	0.6347
AT1G80450			VQ motif-containing protein (....		Potri.006G266700 [exp]	37.94	0.5871
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.010G195000 [exp]	38.47	0.6386
AT1G67850			Protein of unknown function (D...		Potri.010G047200 [exp]	40.29	0.5780
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G316700 [exp]	48.65	0.6006
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.002G025350 [exp]	100.72	0.5524

Compare expression of checked genes

Potri.005G045500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.