Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26932 259 / 4e-81 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 254 / 5e-79 DRB5 dsRNA-binding protein 5 (.1) AT2G28380 227 / 4e-68 DRB2 dsRNA-binding protein 2 (.1) AT3G62800 123 / 4e-31 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3) AT1G09700 94 / 3e-20 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032400 [exp] 948 / 0 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.017G063700 [exp] 261 / 2e-80 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 256 / 1e-78 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.013G061500 [exp] 116 / 2e-27 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038184 [exp] 110 / 2e-26 AT3G62800 145 / 5e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038226 [exp] 108 / 4e-26 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 109 / 3e-25 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.019G037900 [exp] 110 / 4e-25 AT3G62800 151 / 8e-40 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.005G153200 [exp] 94 / 9e-21 AT1G09700 224 / 7e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035176 [exp] 257 / 8e-80 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10032007 [exp] 257 / 1e-79 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 218 / 2e-64 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 212 / 5e-62 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10041311 [exp] 108 / 5e-26 AT2G28380 191 / 1e-57 dsRNA-binding protein 2 (.1) Lus10003362 [exp] 95 / 6e-22 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 94 / 1e-19 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002619 [exp] 84 / 5e-17 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3) Lus10008862 [exp] 83 / 3e-16 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10023248 [exp] 82 / 4e-16 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Potri.005G045700.2 pacid=42802626 polypeptide=Potri.005G045700.2.p locus=Potri.005G045700 ID=Potri.005G045700.2.v4.1 annot-version=v4.1 ATGTATAAGAACCAACTACAAGAGTTGGCTCAAAGAAGCTGTTTCAACCTGCCATCCTATTCGTGTATAAGGGAAGGGCCAGATCATGCCCCTCGATTCA AATCTACTGTCAACTTCAATGGAGAGACTTTTGAAAGCCCTACTTTTTACTCCACTCTGAGGTTAGCAGAACATGCTGCAGCTGAGGTAGCTCTGAACAC CCTAGCAAGCAGAGGCCCTTCTAAAGCATTAATTGCTGGAGTTCTGGATGAAACAGGAGTCTACAAGAATTTGCTCCAGGAGACTGCTCACAGAGCTGGG TTAAAGCTTCCTGTGTACACCACAATTCGATCAGGACCTGGCCATGTTCCTGTGTTCTCGTGCAATGTTGAGCTTGCAGGAATGAGCTTTACTGGAGAAT CAGCAAGAACAAAGAAACAAGCGCAGAAGAATGCAGCCATGGCTGCTTGGTCTGCTCTGAAAAGATTGGTTCAGCACAGCACATCATCTTCCAATTCATC GACTTCTCCTCCAGTGGAGGCTAAAAGGATTAGTGAAGAACAAGAACAAGTTGTTATCGCTCGTGTTCTTGCATCTCTGCAACCAGCTGAGTTAAAGAAC TCCAAACAAAATGATTCCCAGCGAGGCCAGGAGAGATTCTTTCCTGTCTGCAATGACTTAACCCCTCCAATACCAACTTTATATCCTGTGCAGTGCCATA GCTGGGCTTACCCTAGCTTTTCCCCGGAAATGGCCATATACCAAATGTGGCAGCAAGAAGAATTGTTTCAGCTGCAAAACCGTTTATTGGCACTTCAAAT TCCATCGGTTTCTCCTGGCCCTCAAATTCTTCCATATATGCAGTCCATACTCCCCTCTGATTCAGTTCTATTTGGTCCTCTGAGGGAGCAAGAACCTGTA CCTGTAGGACCCAGAATTACAATCGCCACTTCAAGACCATTGTACTTGGCTGATCATGTTGTCCCTGATCCAATCAAGGGAGAGTCCACGGTGACCATTA GTGAGATACATGAGGAGAAACCAGAAGAATCACTCCAGTGCTCTACATCAGTTATTCCAGATCCCCCTGTTGGTGGCAACTTCAATGCTGAACCAAGATC CAAGGACCCAGTTGATATGGATGACAAACAGATGAAGGTTGAACTGGAAAGAAAAGTTGAAAATGTTCAACCAGGAGACAACCAAACTAGAAAATTTGAA TGGGCTTCCAGCAGCAATACAGATTCTGGATATAGACCTGCGGACTTCCAAGCACAAAACAAGCACAGTTTTCACTCTTCCCAGGCTACTCTGCAGTATC CTCCAAGAGCAAGCACGTTCAGGAGTTGTAGACCAGCTCCATCCGCAGCACCTCCTGTAATGATCAGATCTGTGAGGCCTTTACCTTCATCCACTGCACC TTCTGCACTTAACAACAATATGGGACCTCCTTCAGTGCCCAAACTGCAAGATTTGGCAGCACAAAATCCTGCTCCACCGAGAATGCGAACTGGAGGATCT CATTCATATCAGGCCAGGCCCTTGCCTCAAAGAATGAACCTTGGTGGTGTGCACCCGCGTTTCATGGCACCAGCTGTTCGAATAAGATCAGTTGTTCCTG TCTGTTCAGCTCCTCCAGCAAGGAGAATGCCAACTTCAGGTCAAGTGGTACCTGATAGAGAGAGCAAAGCTACAGCAGTACCAGAAGACGTGAAAACAGC AAGTTCAGAGCTTGGTAAGCTTCAAAAATGA
AA sequence Show only first row Show all	>Potri.005G045700.2 pacid=42802626 polypeptide=Potri.005G045700.2.p locus=Potri.005G045700 ID=Potri.005G045700.2.v4.1 annot-version=v4.1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAAAEVALNTLASRGPSKALIAGVLDETGVYKNLLQETAHRAG LKLPVYTTIRSGPGHVPVFSCNVELAGMSFTGESARTKKQAQKNAAMAAWSALKRLVQHSTSSSNSSTSPPVEAKRISEEQEQVVIARVLASLQPAELKN SKQNDSQRGQERFFPVCNDLTPPIPTLYPVQCHSWAYPSFSPEMAIYQMWQQEELFQLQNRLLALQIPSVSPGPQILPYMQSILPSDSVLFGPLREQEPV PVGPRITIATSRPLYLADHVVPDPIKGESTVTISEIHEEKPEESLQCSTSVIPDPPVGGNFNAEPRSKDPVDMDDKQMKVELERKVENVQPGDNQTRKFE WASSSNTDSGYRPADFQAQNKHSFHSSQATLQYPPRASTFRSCRPAPSAAPPVMIRSVRPLPSSTAPSALNNNMGPPSVPKLQDLAAQNPAPPRMRTGGS HSYQARPLPQRMNLGGVHPRFMAPAVRIRSVVPVCSAPPARRMPTSGQVVPDRESKATAVPEDVKTASSELGKLQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.005G045700 [exp]	0	1
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.001G258600 [exp]	2.64	0.8280
AT4G17900			PLATZ transcription factor fam...		Potri.019G051200 [exp]	3.00	0.8401
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.002G141300 [exp]	6.16	0.8456
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Potri.008G173100 [exp]	6.24	0.8480
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.008G138000 [exp]	7.61	0.8061
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	8.83	0.8282
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.001G019000 [exp]	8.94	0.8222
AT1G60670			Protein of unknown function (D...		Potri.010G097000 [exp]	9.74	0.8123
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	10.19	0.8327
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291600 [exp]	10.48	0.8220

Compare expression of checked genes

Potri.005G045700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.