Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 577 / 0 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 566 / 0 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12310 562 / 0 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 556 / 0 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G12330 530 / 0 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G22690 516 / 5e-179 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 500 / 4e-173 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT5G07990 330 / 1e-106 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45580 308 / 2e-98 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT2G45550 301 / 8e-96 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118500 [exp] 735 / 0 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.003G114400 [exp] 488 / 5e-168 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118400 [exp] 441 / 6e-150 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.013G073300 [exp] 327 / 2e-105 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G049800 [exp] 324 / 2e-104 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.001G113900 [exp] 322 / 5e-104 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G025200 [exp] 318 / 3e-102 AT2G45550 322 / 2e-104 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G167900 [exp] 313 / 3e-100 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 309 / 3e-98 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032223 [exp] 614 / 0 AT4G12300 621 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032222 [exp] 569 / 0 AT4G12300 582 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10028914 [exp] 426 / 5e-144 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10004331 [exp] 423 / 1e-142 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 419 / 2e-141 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 409 / 2e-137 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024577 [exp] 407 / 6e-137 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 407 / 4e-136 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 400 / 6e-134 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 395 / 9e-132 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.005G045800.1 pacid=42803497 polypeptide=Potri.005G045800.1.p locus=Potri.005G045800 ID=Potri.005G045800.1.v4.1 annot-version=v4.1 ATGTCATTCGTTGGTTCAAGTTCCCATTTACCTCCTCCATTACCCGTCCATACAGAGCACGCCCTTCCCCTTCTCCGAAACTCAACTCCACAATTTGTAT CCAAATATTTCTCAAAAATTAACACCATGATCAGAACCATCTCGTATTTGCTTGAAGATATCAACATGGATGTGCCTGCAACCATACTAGTTACTCTCTC CGCCATCTTTTCAGTCATTTGGTATGGATGGATATACGCCAAATCTATGAAGAGGAGCTCCTCTCTACCACCAGGTCCGAGAGGCCTCCCATTGATCGGC AATCTTGCGTCTCTTGAACCAGATATTCATTCGTATTTTGCAAAGCTAGCTCAAACTCACGGCCCAATATTCAAGCTTCAACTCGGCTCCAAGCTTGGTA TTGTTGTGACCTCCCCTTCTCTGGCCTCCGAAGTTCTCAAAGATCATGACATTACGTTCGCTAACCGTGACATTCCTGATGTGAGTCGAGCAATGGACTA CGGTCGGTCCAACATAGTTGCAACCCCATATGGTCCCGAATGGAGGATGCTGAGAAAAGTATGCGTCGCCAAGATGCTTAGCAACGCCACCCTGGACTCT CTCTACCCCCTTCGCTCCCGGGAAGTTCGAAACACCATCAAGTACATTTATAGCCATGCAGGGTCACCGATCAACGTGGGAGATCAGCTTTTTCTAACCG TGTTCAATGTCGTAACCAGCATGTTATGGGGTGGCACGGTCCTTGGAAAAGATAGGGCTAGTTTAGGTGCAGAATTTAGAGGAGTGGTGGCTGAGATGAC TGAGTTATTGAGCAAGCCCAACGTTTCGGATTTTTTCCCTAGCCTGGCTAGATTCGATCTACAAGGTGTGGTGAAGAAGATGCGTGGTCTGGCCATGAAG TTCGAGCAGATCTTCGAGAAAATGATTGATAAACGATTGAAGGTTGATGAAAATGGCACGAGGGATGCAGCCAGGAGTAGAAGCATAGAGTGCGAGGACT TCTTGGGATTCTTGCTGAAATTGAAGGACGAGGGAGATCCCAAAACACCACTCACCATGACTCACGTCAAAGCCTTACTCATGGATATGGTCGTGGGTGG CACAGAAACATCCTCGAACGCAGTTGAGTTTGCCATGGCTGAGATTATGAGGAAACCAGAAGTGATGAGAAAAGCACAGCAAGAATTGGATGAAGTGATC GGAAAGGACAGAATGGTACAGGAATCTGACATAAACAAATTGCCATATCTCTATGCCATCATGAAGGAGTCATTGAGGCTGCACCCAGTGCTTCCATTAC TAGTCCCTCATTGCCCTAGTCAAACATGCACAGTAGGAGGCTACACTATCCCCAAGGGCGTTAGGGTTTTTGTGAACGTCTGGGCTATACACAGGGACCC TACAGTATGGGAAAATCCGTTAGATTTTAATCCTGAGAGGTTCTTGAATGGTAGCAGTAAGTGGGACTATTCTGGGAGTGACCTGAGCTATTTTCCATTT GGGTCTGGAAGGAGAAGCTGTGCTGGAATCGCCATGGCTGAGAGGATGTTCATGTACTTCCTCGCCACACTCTTACACTGTTTTGACTGGGAATTACCAG AGGGAAAGGAGCCAGATCTTTCAGAGAAGTTTGGGATTGTTATAAAGTTGAAGAATCCTCTTGTTGTGATCCCAGCTCCAAGGTTACCTGATCCAAACCT CTATGAGTAG
AA sequence Show only first row Show all	>Potri.005G045800.1 pacid=42803497 polypeptide=Potri.005G045800.1.p locus=Potri.005G045800 ID=Potri.005G045800.1.v4.1 annot-version=v4.1 MSFVGSSSHLPPPLPVHTEHALPLLRNSTPQFVSKYFSKINTMIRTISYLLEDINMDVPATILVTLSAIFSVIWYGWIYAKSMKRSSSLPPGPRGLPLIG NLASLEPDIHSYFAKLAQTHGPIFKLQLGSKLGIVVTSPSLASEVLKDHDITFANRDIPDVSRAMDYGRSNIVATPYGPEWRMLRKVCVAKMLSNATLDS LYPLRSREVRNTIKYIYSHAGSPINVGDQLFLTVFNVVTSMLWGGTVLGKDRASLGAEFRGVVAEMTELLSKPNVSDFFPSLARFDLQGVVKKMRGLAMK FEQIFEKMIDKRLKVDENGTRDAARSRSIECEDFLGFLLKLKDEGDPKTPLTMTHVKALLMDMVVGGTETSSNAVEFAMAEIMRKPEVMRKAQQELDEVI GKDRMVQESDINKLPYLYAIMKESLRLHPVLPLLVPHCPSQTCTVGGYTIPKGVRVFVNVWAIHRDPTVWENPLDFNPERFLNGSSKWDYSGSDLSYFPF GSGRRSCAGIAMAERMFMYFLATLLHCFDWELPEGKEPDLSEKFGIVIKLKNPLVVIPAPRLPDPNLYE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Potri.005G045800 [exp]	0	1
AT3G54450			Major facilitator superfamily ...		Potri.001G027100 [exp]	3.60	0.8658
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.009G027300 [exp]	6.00	0.8489	MYB111.1,MYB023
					Potri.010G147200 [exp]	6.48	0.8496
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.017G085000 [exp]	8.94	0.8165
AT5G19640			Major facilitator superfamily ...		Potri.001G013400 [exp]	9.48	0.7956
AT1G31490			HXXXD-type acyl-transferase fa...		Potri.001G128100 [exp]	10.00	0.8334
AT5G39390			Leucine-rich repeat protein ki...		Potri.019G100901 [exp]	12.24	0.7993
AT2G38820			Protein of unknown function (D...		Potri.007G109700 [exp]	12.32	0.7916
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G217800 [exp]	12.96	0.8048
AT4G27290			S-locus lectin protein kinase ...		Potri.011G154400 [exp]	13.22	0.8167

Compare expression of checked genes

Potri.005G045800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.