Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12700 513 / 8e-174 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G63130 473 / 6e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 472 / 1e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 471 / 3e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 471 / 4e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 462 / 1e-155 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 461 / 3e-155 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 461 / 3e-155 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 454 / 1e-152 RPF2 rna processing factor 2 (.1) AT1G62590 450 / 9e-151 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G038400 [exp] 1009 / 0 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 986 / 0 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 982 / 0 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 978 / 0 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 972 / 0 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 972 / 0 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 969 / 0 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 964 / 0 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 790 / 0 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014245 [exp] 527 / 0 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10008593 [exp] 482 / 6e-164 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 484 / 3e-163 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003433 [exp] 476 / 4e-161 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10042768 [exp] 478 / 7e-161 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 472 / 6e-160 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 402 / 5e-133 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 375 / 3e-122 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024962 [exp] 367 / 7e-120 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003427 [exp] 352 / 8e-116 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G046100.2 pacid=42803990 polypeptide=Potri.005G046100.2.p locus=Potri.005G046100 ID=Potri.005G046100.2.v4.1 annot-version=v4.1 ATGAGAAATTGGACGGTGAAGTTTGCGACCATCTCCAGCTTCACAGGAGGCAAAGGAACAGCGAGCGAGAGAGAGAGAGATCAGCAGCTTTTTAACCAAA CAACGATGATGTTCATGCGAAATAGCGCTTTCAGAGCTATTGCTTCTTCTGCTATTCGGGTCCCTCAACATCATATGGAAATGGGTATCTTTCCTTTATT CTTCAATCATCACCACATTACCACCTCTACCTGTACAAATAATCCTTTTTTGCCTCAAAAAAATGGTGGGTTTGTTAGTAATACTACCAATAACATTAGC ATTGATGATGCCTTGGCTTCATTCTATAGCATGGTCCGGATGAATCCTAGGCCTTCTGTTGTGGAATTTTGCAAATTCTTAGGGTCCTTTGCCAAAAGCA AACAGTATTCCACTGTTGTCTCTTTGTGCGATCAAATTGATTTGTTTGGAGTTGCCCACAATGATTATACTCTCAATATATTGATTAACTCTCTTTGTCG CTTGAACCATGCTCATTTTGCTGTCTCTGTCTTGAGTAAGATGTTCAAACTGGGTATTCAACCTGATGTTATCACATTCAATACACTCATTAATGGGCTC TGCAACGAGGAGAAGATTAAAGATGCTGCAGAGTTGTTTAATGAGATGGTGCGGAGAGGGCATGAGCCTGATGTAATTAGCTATAATACTATAATCAATG GTTTGTGCAAAACTGGCAACACAAATATGGCTGTTCACGTGTTCAAGAAGATGGAACAAAATGGGTGCAAGCCAGATGTGGTGACATATAGTACAATCAT AGACAGCCTTTGCAAAGATAAGCTATTTAATGATGCCATGGACTTCTTATCTAAGATGGTGGATCGGGGCATTTCACCAAATGTTTTTACTTACAACTCC ATACTCCATGGCTTCTGCAATTTAGGACAACTGAATGAAGCTACTAGATTGTTCAAAGAAATGGTTGGTAAGGATGTTATGCCAGATACAGTGACGTTCA ATATTTTGGTTGATGGACTCTGCAAAGAAGGGATGGTTTTAGAAGCTCGGTGCGTCTTTGAAATGATGACCGAAAAAGGTGTTGAGCCAAATGTTTACAC CTACAGTGCCTTGATGGATGGATATTGTTTACAAAACCAAATGAACGAGGCCCACAAAGTGCTTGACATCATGGTTGGCAAGGGTTGTGCACCTGATGTA CATAGTTACAGCATCTTGATCAATGGATATTGCAAGAGTAGAAGGATGGATAAGGCAAAAGCATTACTTACTCAAATGTCTGAAAAAGAATTGACTCCTA ATACTGTCACTTACAACACTCTTATGCATGGCATGTGCCAAGTAGGGAGACCCCGAGAAGCTCAAAAGCTTTTCAAGGAGATGTGTTCTTCTGGCCTGCT TCCAAATTTGATGACTTACTCGATTTTGCTAGATGGCTTGTGCAAACATGATGGGCATTTGGATGAGGCATTACAACTGCTCAAGGCAATGCAAGAGAGG AAAATAGAGCCTGATATCGTCCTTCATACTATTATTATTGAGGGGATGTTTATTGCTGGGAAGCTTGAAGTTGCAAAGGAACTATTTTCCAAGCTTTTTA CTGATGGAATTCAACCTACTGTACAGACATACAATGTCATGATCAAGGGACTTCTTAAAGAAGGGCTGTCAAATGAAGCATACGAATTGTTTAGAAAAAT GGAAGTTGATGGTTTCTTGCCGAACAGTTGCTCTTATAATGTTATCATTCAAGGATTTCTTCAAAATCAGGACTCAACAGCTGCTGTACAACTTATTGAT GAAATGGTTGGTAAAAGATTCTCGGCGGATTCATCTACATTTCAGATGTTATTGGATCTGGAATCTCATGATGAAATCATAAGCCGATTTATGCGTGGAA GCTCTCAACATAGAAAAATGAAGTGA
AA sequence Show only first row Show all	>Potri.005G046100.2 pacid=42803990 polypeptide=Potri.005G046100.2.p locus=Potri.005G046100 ID=Potri.005G046100.2.v4.1 annot-version=v4.1 MRNWTVKFATISSFTGGKGTASERERDQQLFNQTTMMFMRNSAFRAIASSAIRVPQHHMEMGIFPLFFNHHHITTSTCTNNPFLPQKNGGFVSNTTNNIS IDDALASFYSMVRMNPRPSVVEFCKFLGSFAKSKQYSTVVSLCDQIDLFGVAHNDYTLNILINSLCRLNHAHFAVSVLSKMFKLGIQPDVITFNTLINGL CNEEKIKDAAELFNEMVRRGHEPDVISYNTIINGLCKTGNTNMAVHVFKKMEQNGCKPDVVTYSTIIDSLCKDKLFNDAMDFLSKMVDRGISPNVFTYNS ILHGFCNLGQLNEATRLFKEMVGKDVMPDTVTFNILVDGLCKEGMVLEARCVFEMMTEKGVEPNVYTYSALMDGYCLQNQMNEAHKVLDIMVGKGCAPDV HSYSILINGYCKSRRMDKAKALLTQMSEKELTPNTVTYNTLMHGMCQVGRPREAQKLFKEMCSSGLLPNLMTYSILLDGLCKHDGHLDEALQLLKAMQER KIEPDIVLHTIIIEGMFIAGKLEVAKELFSKLFTDGIQPTVQTYNVMIKGLLKEGLSNEAYELFRKMEVDGFLPNSCSYNVIIQGFLQNQDSTAAVQLID EMVGKRFSADSSTFQMLLDLESHDEIISRFMRGSSQHRKMK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046100 [exp]	0	1
AT1G63080			Pentatricopeptide repeat (PPR)...		Potri.005G047400 [exp]	3.74	0.7795
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050300 [exp]	5.29	0.8294
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.017G032100 [exp]	6.78	0.7308
AT3G48810			Pentatricopeptide repeat (PPR)...		Potri.008G102100 [exp]	7.74	0.7786
AT5G18750			DNAJ heat shock N-terminal dom...		Potri.010G018800 [exp]	11.40	0.8205
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050180 [exp]	16.00	0.7986
AT1G01500			Erythronate-4-phosphate dehydr...		Potri.002G163300 [exp]	17.83	0.6862
AT2G41890			curculin-like (mannose-binding...		Potri.001G006100 [exp]	18.52	0.7276
AT3G63390			unknown protein		Potri.002G047400 [exp]	20.29	0.8233
AT2G41020			WW domain-containing protein (...		Potri.006G032200 [exp]	24.37	0.7573

Compare expression of checked genes

Potri.005G046100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.