Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05100 484 / 2e-173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G034000 [exp] 570 / 0 AT3G05100 481 / 5e-172 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001712 [exp] 493 / 6e-177 AT3G05100 474 / 2e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004147 [exp] 492 / 3e-176 AT3G05100 471 / 6e-168 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019000 [exp] 479 / 2e-171 AT3G05100 462 / 1e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033850 [exp] 477 / 2e-170 AT3G05100 452 / 8e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G046300.1 pacid=42803095 polypeptide=Potri.005G046300.1.p locus=Potri.005G046300 ID=Potri.005G046300.1.v4.1 annot-version=v4.1 ATGGCATTATCAACAGTAACATATTCACCAGCACAAAAGGGAATAGTAATTTCAATTCCAACGTTAGTTCTTTCAGTTTTGATAGCAGCAATAATGTTAT TCTTTCTCCTGTCTTCTCTCTCTACATGTTCTTGTCCCTCTTCTTTGCAAAGCTTTAATGATAATAACAATGGTGGAGATGGGCTTGGCGAGGTTGATAG AAAAGAAAGAATATCAGCTACAGAAGAGGATATTGAATGGATTAAAGATCAGATCCAAGCTAATGGTTTACATATGCAAGATAATGTTCTTCGTAAAGGG ATTAATCCTCGTACTAGAGCTCAACAGTTACAAGATCTTATCCAGTTCAAGGGCATATCACATTATGAAGGGCCAGAGTCAGATAATCACACCGCACTCC CATGTCCTGGTGAGCTACTTGTGGAAGAGCACCATAGCAACTATGGGGAGCCCTGGGCAGGTGGACGGGATGTGTTTGAGTTCCTTGCTGAGTCTAGCCG CCTATCACCCAACTCACGTGTGCTTGAGATTGGGTGCGGAACTCTCCGTGTTGGCTCACATTTTATTCGTTATCTCAGCCCTGAGCACTACCACTGTCTT GAAAGAGATGAGCTCTCTCTGATGGCTGCATTCAGATATGAACTTCCTTCTCAGGGTCTTTTACACAAGCGTCCTCTGATTGTGCGAGGTGAAGACATGG ATTTCTCCAAGTTTGGTTCTCGAGTGGTGTATGATTTGATATATGCTAGTGCTGTGTTTCTTCATATGCCTGATAAGCTTGTCTGGGTTGGACTAGAAAG ATTAGTGAGCAAGCTGAAGCCTTATGATGGCCGAATCTTCGTGTCACATAATATGAAGTTCTGCTCAAGATTGGGAGGTGAGGAATGCACTAAGAGGTTG ACCAGTTTGGGACTTGAGTATCTTGGAAAGCATACACATGATAGCTTGCTTTTTAATCACTATGAAATTTGGTTCGAGTTTAGGCGTTCCAAAGCTTAG
AA sequence Show only first row Show all	>Potri.005G046300.1 pacid=42803095 polypeptide=Potri.005G046300.1.p locus=Potri.005G046300 ID=Potri.005G046300.1.v4.1 annot-version=v4.1 MALSTVTYSPAQKGIVISIPTLVLSVLIAAIMLFFLLSSLSTCSCPSSLQSFNDNNNGGDGLGEVDRKERISATEEDIEWIKDQIQANGLHMQDNVLRKG INPRTRAQQLQDLIQFKGISHYEGPESDNHTALPCPGELLVEEHHSNYGEPWAGGRDVFEFLAESSRLSPNSRVLEIGCGTLRVGSHFIRYLSPEHYHCL ERDELSLMAAFRYELPSQGLLHKRPLIVRGEDMDFSKFGSRVVYDLIYASAVFLHMPDKLVWVGLERLVSKLKPYDGRIFVSHNMKFCSRLGGEECTKRL TSLGLEYLGKHTHDSLLFNHYEIWFEFRRSKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05100			S-adenosyl-L-methionine-depend...		Potri.005G046300 [exp]	0	1
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Potri.013G111200 [exp]	2.00	0.7868	Pt-FUT1.2
AT2G37975			Yos1-like protein (.1)		Potri.008G063000 [exp]	4.47	0.7991
AT5G05670			signal recognition particle bi...		Potri.002G020900 [exp]	8.36	0.7580
AT2G43810			Small nuclear ribonucleoprotei...		Potri.008G078400 [exp]	8.48	0.7859
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Potri.006G117600 [exp]	12.00	0.7531
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.003G043700 [exp]	12.40	0.7513
AT5G11280			unknown protein		Potri.006G251600 [exp]	13.60	0.7793
AT1G73820			Ssu72-like family protein (.1)		Potri.015G036600 [exp]	15.00	0.7130
					Potri.005G149601 [exp]	17.77	0.6915
AT1G05720			selenoprotein family protein (...		Potri.013G126900 [exp]	17.88	0.7836

Compare expression of checked genes

Potri.005G046300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.